| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4554 |
|---|
| Symbol | |
|---|
| ID | 3680119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 5706227 |
|---|
| End bp | 5707870 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637719910 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_325047 |
|---|
| Protein GI | 75910751 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.196541 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTGGA TTACGCTACT GCGATCGCTA CAGTCTGATT TTATTAAAAG GTTATCATCT
GGTTGTCTGC TGCATTGCGA AATCGAAGGT CAATATAGTG AGTTAACAGT CATCTCTGGC
GAAAGATTAA AAACCCTACG AGATTTTTGC TGGCTGATGG CTGAAAAATA CAAGCGGGTT
TCGCCAGTTC GTGATGTTTT TATTAGCTAC CTCAAGGGGA AATTAGGTGA GGAAGTTGTT
AAAGAACGTT TAGCTGATTT GATTACCGAA GTAGATTATG AGAAGCGGCT TGGTGGCGAT
GGCAAGATAG ATTTTACTTT AACTGCTAAC CCTGCAATTG GCATTGAAGT TAAATCTCGT
CATGGCAACA TTGATAGAGT GAGATGGTCA GTTAGTGCCG AAGAAGTGGA AAAAAATGCA
GTTGTAGTTT GCATTTTTAT TAAAGAAGAT GTTAATGAAG CACAATCATC ATATCATCTG
TTATTAGCTG GCTTTTTACC TACTCAAATG ATTAAATTAA AGACAGGTAA TATCTCATTT
GGAATAGAGC AATTACTTTA TGGTGGCGGC TTATGGGGTT ATTTGGAACA GTTGCAAGCT
TCCAGCAACT ATCATCAGTT CCAGCAATCT CCGCCAATTT ATGAATATCA ACCCCAGCCA
GAATTTTCAA CTAAAATCAA TCAAAGTCAA TCAATCAAAC CAGCTTTATT TACTGGTATC
AAAAATATTC TATCTTATAG ACGAGAAGAA GATATAAATA TAGATTATAT AAAACTTGGT
GATGAGTGTT TTGCTCAAGG TGAATATACT GCATCTATTA AGAATTATAG CCAAGCTTTA
CAAGCAAGTA GTAATAATGG TGAATTATAT TATAAACGAG GTTTAACTTA TTATCAATTG
GGAGATTATG AGGCGGCGAT CGCTGATTAT TCTCAAGCCA TAAATCTCAA CTTTCACGAT
GCTAAATCCT ATCATAAACG TGGCTTGGCT TTATCACAAC TAGCAGCTTA TGAAGCGGCA
ATTGACGATT ATAACCAAGC AATTAGAATT AATCCTCATG CTGCTTCTAT TTATAAAAAC
CGAGCAGAAG CACGCTCTCA TTTAGGAGAT AATCAAGGAG CGATTGAAGA TTATACCCAA
GCGATCAAGA TTAATCCCCA ATATGCAGAT ACATATAAAA ATAGAGGCAT ATCTCGTTAT
TTATTAGCAA CACAACCAGG ATTTACCCAA GCAATTAAGA TTAATCCCAA TGATGCTAAT
GCTTACAAAA ATCGTGGTAA TGCGCGTGCT GATATTGGTG ATTATGCAGG AGCGATTGAA
GATTATAATC AGGCAATCCA AATTAATCCC AAGGCGGCTG ATGCTTATTA TAACCGTGGT
AACGCCCGTT ATGATTTAGG GGATGAAGAA GGAGCGATCG CTGATTACAC CCAAGCAATC
CAAATTAATC CCAGCTATGC TGATGCTTAT TATAACCGTG GTAATGTGCG TGCAGGCATA
AAAGATAAAC AAGGCGCGAT CGCTGACTTT CAAAAAGCAG CAGATATATA TCGTAAAGAA
GGTAAATTAG CAGAACTCAA AGATGCAACA GAAAGAATTG TAGAATTGGA AATAGAAGAA
TCCATTGATA TTTTAAATTT TTAA
|
|---|
| Protein sequence | MDWITLLRSL QSDFIKRLSS GCLLHCEIEG QYSELTVISG ERLKTLRDFC WLMAEKYKRV
SPVRDVFISY LKGKLGEEVV KERLADLITE VDYEKRLGGD GKIDFTLTAN PAIGIEVKSR
HGNIDRVRWS VSAEEVEKNA VVVCIFIKED VNEAQSSYHL LLAGFLPTQM IKLKTGNISF
GIEQLLYGGG LWGYLEQLQA SSNYHQFQQS PPIYEYQPQP EFSTKINQSQ SIKPALFTGI
KNILSYRREE DINIDYIKLG DECFAQGEYT ASIKNYSQAL QASSNNGELY YKRGLTYYQL
GDYEAAIADY SQAINLNFHD AKSYHKRGLA LSQLAAYEAA IDDYNQAIRI NPHAASIYKN
RAEARSHLGD NQGAIEDYTQ AIKINPQYAD TYKNRGISRY LLATQPGFTQ AIKINPNDAN
AYKNRGNARA DIGDYAGAIE DYNQAIQINP KAADAYYNRG NARYDLGDEE GAIADYTQAI
QINPSYADAY YNRGNVRAGI KDKQGAIADF QKAADIYRKE GKLAELKDAT ERIVELEIEE
SIDILNF
|
|---|
| |