| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4542 |
|---|
| Symbol | |
|---|
| ID | 3680146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 5694274 |
|---|
| End bp | 5696247 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637719898 |
|---|
| Product | nitrate transport ATP-binding subunits C and D |
|---|
| Protein accession | YP_325035 |
|---|
| Protein GI | 75910739 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
[COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01184] nitrate transport ATP-binding subunits C and D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTACTT TTGTTGAAGT TGATCACGTT GATCGGATAT TTGATTTACC TAATGGTGGT
AGATATATTG CACTGAAAAA TATTGAGTTG AAAATTAAGC AGGGGGAGTT TGTTTCTTTA
ATTGGACATT CTGGTTGTGG TAAGTCTACT TTGCTCAATA TTATTGCTGG GTTGGATCGA
GCTAGTATTG GCGGTGTGAC TTTGGAAGGG CGGGAAATTC GAGAACCTAG TCCAGATAGG
ATGGTGGTTT TTCAAAATTA TTCGCTGCTT CCTTGGTTAA CTGTGCGGGA AAATGTTGCT
TTGGCCGTGG ATGAGGTTTA TCAAGGTAAG TCTAAGGGTG AGCGTCGGGC AATTGTTGAA
GAACATATTG ATATGGTGGG GTTGCGTCTA GCGGCGAATA AACGTCCTCG TGAGTTATCG
GGGGGGATGA AACAACGGGT GGCGATCGCC CGCGCTTTAG CTACTCGTCC CAAGTTGTTG
CTGTTAGACG AACCTTTTGG GGCTTTGGAT GCTTTGACAA GGGGGAGTTT GCAAGAACAG
TTGATGAAAA TCTGCAATGA ACATCAAATT ACTTGTGTGA TGGTGACACA TGATGTGGAT
GAGGCGCTGT TGTTGAGCGA TCGCGTGGTG ATGCTTACCA ACGGCCCAGA AGCTCACATC
GGGCAGATTC TCGAAGTCCC TATCCCCCGT CCCCGTCAAC GTTTGGAGGT TGTCAAACAT
CCCAGCTATT ACAATCTGCG GAATGAGATA ATTTACTTCC TCAACCAACA AAAGCTAGCT
AAGAAACGTC AAACACAGCA GGCTTCTGCA CCACTGGGGA CAGCCAAAGC CGTCATCGAA
ATCGGCTTTA TGCCTTTGAC TGACTCTGCA CCTTTAATTG TTGCCAAAGA AAAAGGCTTC
TTTGCCAAGT ATGGCTTAGA TAATGTTATC CTCAACCGGG CAAACAACTG GCAGGCGATC
GCTACTGGTG TGGTAACGGG CAAATTAGAT GCAGCCCAAA TGGTTGCAGG AATGCCGATT
GCGTTAACTT TAGGTGCTGG GAGTCAAACA CCAACTCCTG TCATCAACGC CTTAAATCTT
TCTCGCAACG CTAACGCCAT CACCTTCAGC AAAAGACTAT ACAGCCAAGG CGTGAGAAGC
CTAGCTGACT TAAAAGCAGT AATTGATAGT TCCCCAGACA AAATCCTCAC CTTAGGGGTA
GTTCATTCCG CCTCCATGCA AAACCTAATT CTGCGTTACT GGTTAGCAGC CGGCGGTATA
GATCCCGATA GAGATGTTAG CTTGACAGTC ATTCCCCCAA CCCAAATGGT GTCTCAACTC
AAAGCCGGCA ACATTGACGG TTACTGTGCA GGAGAACCTT GGAACTACCA AGCAGTCCAC
GATGATTTAG GCTTCGTTGC AGCTACAGCT TTAGAAATCT GGTCAGGACA GCCGAAAAAA
GTCTTGGGAG TGCGGGAAGA TTGGGCGCAA AAATATCCAG AAACTTATCT TAACCTCGTC
AAAGCACTAA TAGAAGCCTG CAAATATTGT GACGACCTCC GCAACCGTGA AGAAATCCTC
GAAATACTCT GTCGTCCCGA ATATTTAGAT GTGAATCCCG CCTACGTCCG CCCTGGCTTC
ATCGACCCCT ACGATCGCGG GGACGGTACA CCACCCCAAC AACTCACAGC CTACAACCAG
TTTTACCTCA ACAAAACCAA CTATCCCAAC CGCACCGAAA TCTTGTGGAT GATCACACAA
ATGGCACGTT GGGGCTTAAC ACCATTCCCC AAAAACTGGG TAGAAATCAC CGAAAGAGTT
TGCCGCACAG ACATATTTGG TGCAGCAGCC CGCGACCTCG GCTTACTAGA TATCGGCGAA
GACGACCCCA TTCACCTATT CGACGGTAAA CTATTTAACC CATCAGAACC AATCGAATAC
CTCAAAAGCT TAGAAATTAG ACGACAAATA CGTATTGAAG AAGTGTTTAT TTAG
|
|---|
| Protein sequence | MPTFVEVDHV DRIFDLPNGG RYIALKNIEL KIKQGEFVSL IGHSGCGKST LLNIIAGLDR
ASIGGVTLEG REIREPSPDR MVVFQNYSLL PWLTVRENVA LAVDEVYQGK SKGERRAIVE
EHIDMVGLRL AANKRPRELS GGMKQRVAIA RALATRPKLL LLDEPFGALD ALTRGSLQEQ
LMKICNEHQI TCVMVTHDVD EALLLSDRVV MLTNGPEAHI GQILEVPIPR PRQRLEVVKH
PSYYNLRNEI IYFLNQQKLA KKRQTQQASA PLGTAKAVIE IGFMPLTDSA PLIVAKEKGF
FAKYGLDNVI LNRANNWQAI ATGVVTGKLD AAQMVAGMPI ALTLGAGSQT PTPVINALNL
SRNANAITFS KRLYSQGVRS LADLKAVIDS SPDKILTLGV VHSASMQNLI LRYWLAAGGI
DPDRDVSLTV IPPTQMVSQL KAGNIDGYCA GEPWNYQAVH DDLGFVAATA LEIWSGQPKK
VLGVREDWAQ KYPETYLNLV KALIEACKYC DDLRNREEIL EILCRPEYLD VNPAYVRPGF
IDPYDRGDGT PPQQLTAYNQ FYLNKTNYPN RTEILWMITQ MARWGLTPFP KNWVEITERV
CRTDIFGAAA RDLGLLDIGE DDPIHLFDGK LFNPSEPIEY LKSLEIRRQI RIEEVFI
|
|---|
| |