| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4532 |
|---|
| Symbol | |
|---|
| ID | 3680136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 5679823 |
|---|
| End bp | 5681730 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637719888 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_325025 |
|---|
| Protein GI | 75910729 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCTGA GTGAAATCAC CCATCCCAAT CAGCTGCACG GTCTATCCAT CCGTCAACTG
CAACAAATTG CCCGTCAGAT TCGAGATAAA CACCTGCAAA CAGTAGCCGA ATTTGGTGGA
CATCTAGGGC CTGGCTTGGG TGTTGTAGAG TTAACACTAG GGCTTTACCA GACTCTAGAT
TTAGACCGGG ATAAAGTTAT ATGGGATGTA GGACACCAAG CTTATCCCCA CAAATTGATT
ACAGGACGCT ACAGCGACTT TCATACCCTT AGGCAAAAAG ATGGAATTGC TGGTTATCTC
AAGCGTGGTG AAAATAAATT TGATCATTTT GGTGCAGGCC ACGCTTCAAC CAGCATCTCC
GCAGCCTTGG GTATGGCTTT AGCACGAGAC ATGAACGGGG AAAAGTTTAA AGCCGTGGCC
GTGATTGGCG ATGGTGCATT AACAGGTGGT ATGGCGTTGG AAGCTATCAA CCATGCTGGA
CACTTGCCGA AAACCAACTT ATTGGTTGTT CTCAACGACA ATGAGATGTC TATCTCTCCC
AATGTCGGCG CGATTCCTCG CTACCTCAAC AAAATGCGCC TCAGTCCCCC GGTGCAGTTC
ATCAAGGATA ATTTTGAGGA ACAGTTCAAA CACATTCCCT TTGTTGGCGA ATCCCTATCT
CCCGAACTAG GAAGAATTAA AGAAGGGATG AAACGTCTAG CTGTTCCCAA GGTAGGTGCA
GTATTTGAAG AACTGGGCTT TACCTACATG GGGCCAGTTG ATGGGCATAA CTTAGAGGAA
TTGATTGCTA CCTTCCAACA AGCACACCAA ATAGCTGGGC CAGTGTTAGT TCATGTAGCC
ACTATCAAAG GTAAAGGCTA CGAACTCGCA GAAAAAGACC AAGTAGGCTA CCATGCCCAA
ACTCCTTTTA ACCTGACAAC TGGCAAGGCA ATTCCCTCCA ACAAACCCAA ACCCCCTGCT
TATGCCAAAG TCTTTTCCCA TACCTTAGTT AAATTAGCCG AACAAAACCC GAAAATTATT
GGGATTACTG CGGCGATGGC GACAGGAACA GGCTTAGATA AGCTACAAGC AAAACTGCCC
AATCAATATA TTGATGTGGG CATTGCGGAA CAACACGCAG TCACCCTTGC AGCTGGGTTG
GCTTGTGAAG GAATGCGTCC TGTAGCCGCC ATCTACTCTA CTTTCTTACA ACGGGCATAC
GACCAAATTA TCCATGATGT CTGTATCCAA AATTTACCAG TATTCTTCTG TTTGGATCGG
GCAGGAATTG TCGGTTCTGA TGGCCCTACC CACCAAGGTA TGTATGACAT TGCCTATCTA
CGGTGCATTC CCAACATTGT AATGATGGCA CCGAAAGATG AAGCAGAAAT GCAACGGATG
GTAGTTACTG GTATTGAATA TACCACCGGG CCCATCGCTA TGCGTTTCCC TCGTGGCAAT
GGCTACGGTG TACCTCTGAT GGAAGAAGGT TGGGAACCTT TGGAAATCGG TAAAGGTGAA
ATTCTCCGCA ACGGTGATGA TGTGTTAATC ATCGGTTACG GCACAATGGT TTACCCCAGT
ATGCAGGCGG CGGAAATTCT CAGCGAACAC GGGATTGAAG CGACTGTGAT TAATGCCCGG
TTTGTGAAAC CCTTGGATAC TGAGTTGATT GTGCCTTTAG CTCAGAAAAT CGGCCGAGTT
GTCACTCTAG AAGAAGGCTG TGTGATGGGT GGCTTTGGTT CAGCCGTAGC AGAAGCATTG
TTAGATGCTG ATGTTGTGGT TCCTGTCAAA CGCATTGGTA TTCCCGATGT ATTGGTAGAA
CACGCCACTC CAGATGAGTC TAAGGCGGAA TTAGGTTTAA CTAGCCGTCA AATCGCTGAA
AGAGTTCTAC AGGCTTACTT TCAAAAGCAG GTATCTGCGG TGATTTAG
|
|---|
| Protein sequence | MHLSEITHPN QLHGLSIRQL QQIARQIRDK HLQTVAEFGG HLGPGLGVVE LTLGLYQTLD
LDRDKVIWDV GHQAYPHKLI TGRYSDFHTL RQKDGIAGYL KRGENKFDHF GAGHASTSIS
AALGMALARD MNGEKFKAVA VIGDGALTGG MALEAINHAG HLPKTNLLVV LNDNEMSISP
NVGAIPRYLN KMRLSPPVQF IKDNFEEQFK HIPFVGESLS PELGRIKEGM KRLAVPKVGA
VFEELGFTYM GPVDGHNLEE LIATFQQAHQ IAGPVLVHVA TIKGKGYELA EKDQVGYHAQ
TPFNLTTGKA IPSNKPKPPA YAKVFSHTLV KLAEQNPKII GITAAMATGT GLDKLQAKLP
NQYIDVGIAE QHAVTLAAGL ACEGMRPVAA IYSTFLQRAY DQIIHDVCIQ NLPVFFCLDR
AGIVGSDGPT HQGMYDIAYL RCIPNIVMMA PKDEAEMQRM VVTGIEYTTG PIAMRFPRGN
GYGVPLMEEG WEPLEIGKGE ILRNGDDVLI IGYGTMVYPS MQAAEILSEH GIEATVINAR
FVKPLDTELI VPLAQKIGRV VTLEEGCVMG GFGSAVAEAL LDADVVVPVK RIGIPDVLVE
HATPDESKAE LGLTSRQIAE RVLQAYFQKQ VSAVI
|
|---|
| |