| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4474 |
|---|
| Symbol | |
|---|
| ID | 3680330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 5601055 |
|---|
| End bp | 5602557 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637719829 |
|---|
| Product | NAD(P)H-quinone oxidoreductase subunit D4 |
|---|
| Protein accession | YP_324967 |
|---|
| Protein GI | 75910671 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
|---|
| TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.220844 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAGTG TCTTGATCTT TGCCCCATTA TTGGGTGCGC TGCTAATTGG TATATTCCCG
TCTGGTATTA ATGGGAGAAT TTCCCGTAAT GTGGCATTGA TTTCTGCCAG TGTAACTTTT
CTGTGGTCGG TGATACTAGC TAGCCAGTTT CAAACAGGAG AAGTTAACCA GCAGTTTAGT
GAGTTCTTAC CTTGGATAGA TTCCTTAGGA TTGAGTTATA ATCTTGGTGT GGATGGTCTA
TCTTTGCCGT TGCTGGTGTT GAATGGATTA TTAACTGCCA TTGCCATTTA CAGCAGCGAT
GAATCCTTGC AACGTCCTAA GTTTTATTAT TCATTGATAT TGGTGTTGAG TACTGGGGTA
GCAGGAGCCT TTCTGGCGCA AGATTTACTG CTATTCTTCT TGTTTTATGA ACTAGAACTC
ATTCCCCTGT ATCTCTTAAT TGCTATTTGG GGTGGTGCCA GACGGGGTTA TGCAGCTACG
AAATTCTTGA TTTACACTGC TTTTTCAGGA ATTTTGATTT TAGCCAGTTT CTTGGGCTTG
GTTTGGTTGA GTGGATCTGG TAGCTTTGCA CTATCAACCT TAAATGCTCA GTCTCTACCT
TTAGCAACTC AACTGCTACT TCTAGCGGGG ATTTTAGTAG GTTTCGGCAT CAAAATGCCC
TTAGTTCCTT TTCATACTTG GTTACCAGAT GCACACGTTG AAGCCTCTAC ACCGATTTCT
GTGTTGCTGG CTGGTGTGCT GTTGAAGTTG GGAACTTATG GCTTATTGCG ATTTGGCATG
AACTTGTTAC CAACAGCCTG GAATTATTTA GCACCTTGGT TGGCGGTTTG GGCAGTGGTG
AGTGTGTTGT ATGGTTCGTC ATGTGCGATC GCGCAAACAG ACATGAAAAA AATGGTAGCC
TACAGTTCAA TAGGACATAT GGGCTATGTG TTGTTAGCGG CGGCGGCGGC TACACCATTA
AGCACCTTGG GTGCTGTTAT GCAGATGATT AGCCACGGTT TAATTTCGGC ACTGCTGTTT
TTGTTGGTGG GGGTTGTGTA TAAAAAAGCA GGTAGCCGCG ATTTAGATGT ACTCCGAGGT
TTGTTGAACC CAGAACGGGG TATGCCTGTA ATTGGTACTT TGATGATTGT CGGCGTGATG
GCTAGCGCCG GAACTCCGGG GATGGTGGGA TTTATCTCCG AATTTATTAT ATTTCGGGGT
TCCTTTGCGG TTTTTCCAGT GCAAACCCTG TTGTCGATGA TTGGCACTGG GTTAACGGCG
GTTTACTTCT TAATTCTCGT TAATAAAGCA TTTTTTGGGC GCTTATCGGC CCAGGTTATG
AATTTACCAC GGATTTATTG GAGCGATCGC GCTCCTGCTT TTATCTTAGC GGTGCTAATT
GTGATTTTTG GTATCCAACC TTCTTGGTTA GCCCGTTGGA CTGAACCTAC CATTACAGCT
ATGTTTAGTG TTGAAGGTAC GGTGGCAACA GTCTCTTTAG ATAAAGTAAA GGGTAAAAGT
TAA
|
|---|
| Protein sequence | MLSVLIFAPL LGALLIGIFP SGINGRISRN VALISASVTF LWSVILASQF QTGEVNQQFS
EFLPWIDSLG LSYNLGVDGL SLPLLVLNGL LTAIAIYSSD ESLQRPKFYY SLILVLSTGV
AGAFLAQDLL LFFLFYELEL IPLYLLIAIW GGARRGYAAT KFLIYTAFSG ILILASFLGL
VWLSGSGSFA LSTLNAQSLP LATQLLLLAG ILVGFGIKMP LVPFHTWLPD AHVEASTPIS
VLLAGVLLKL GTYGLLRFGM NLLPTAWNYL APWLAVWAVV SVLYGSSCAI AQTDMKKMVA
YSSIGHMGYV LLAAAAATPL STLGAVMQMI SHGLISALLF LLVGVVYKKA GSRDLDVLRG
LLNPERGMPV IGTLMIVGVM ASAGTPGMVG FISEFIIFRG SFAVFPVQTL LSMIGTGLTA
VYFLILVNKA FFGRLSAQVM NLPRIYWSDR APAFILAVLI VIFGIQPSWL ARWTEPTITA
MFSVEGTVAT VSLDKVKGKS
|
|---|
| |