| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4440 |
|---|
| Symbol | |
|---|
| ID | 3680433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 5561827 |
|---|
| End bp | 5563422 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637719794 |
|---|
| Product | S-layer region-like |
|---|
| Protein accession | YP_324933 |
|---|
| Protein GI | 75910637 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.016737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAA TATGGAAGTA TTGGCTGGTT AACCCAGTAA TTTGCAGCAC AATGCTATTT
TCTGGCGCTG CGGCCTTTGC AGGAGAAACC CCTGCCACAA CAGAAATAAA TGAAACCTCA
GAAACCTCAA AAATAGCTAA TGCAGAACTA GCTACTCAAC AAGAGGTAAT GTCACAAGTT
ACCTCAGTTT CTCAGTTTTC CGACGTACAA CCTACAGACT GGGCTTTCCA AGCATTGCAA
TCACTGGTAG AACGTTATGG TTGTATTGCA GGGTATCCCA ATGGGACATA CCGTGGTAAT
CGCGCCCTGA CCAGGTATGA ATTTGCCGCA GGTTTGAATG CTTGTCTGGA TCGAGTCAAT
GAACTCATAG CTACTGCCAC GGCGGAGTTA GTCACAAAAG AAGACTTAGC TACACTACAA
AAGCTACAAG AAGAGTTTTC TGCGGAACTA GCAACATTAA GAGGTCGAGT TGATGCTTTA
GAAGCACGTA CCTCGGAATT AGAAGCCAAT CAATTCTCGA CTACAACAAA GCTGCAAGGA
CAAGTAGTAT CAGTTATCAG CGATGTCTTA TCAGGCGATC GCGTCAATAA TGCAGATATC
GTCGATACAA ATACTACTCT GGGAGTACGG GCGCGATTAG AACTTGTCTC CAGCTTCACT
GGGCAAGATA CCTTGTTCAC CAGAATTGAA GCTAACAACA TTACTAGCCC CGACATTAAT
ACTCCAGAAG GTAACCTATT CTTCGCTAGT GCTGCACCTA GTACTAACGC TGCTATTGGT
ACTTTGTGGT ATGGCTTTCC CTTAGGCAAG AACACCCAAG CCAAGCTAAT TGCTGTTGGC
GGCGCAGCAG ACGACCTCAC CAGTACCGTA AACATATTTG ATGGAGATGG TGCTTTTGGT
GCTTTAACTA CCTTTGGTAC ACGTAACCCG ATTTATGGGC AGATAGGTGG TACTGGTCTG
GGTGTCACTC ACCAGTTTAG TGATAAATTA GCCTTGAGCT TGGGTTATTT GAGCGGTACA
GCAAATAACC CATCACCCCA AAACGGTTTA TTTGATGGCG CTTATGGTGC ATTAGCGCAA
CTGACAGTTA GACCAAGCGA TCGCACCAGT GTTGGCTTAA CATATATCAA TTCTTATCGG
CAACCTCTAG CCACTGGTAG TAACGCTGCA ACCACCTTCC AAGGTTTAGA CGAAAGATTC
TCCAGCAATT CCTACGGTCT CCAAGCTTCT ATCGGTCTCA GTGAAAAATT AGTCTTGGGT
GGATGGGCTG GTTACACCAA TAGCCGCATC TTGACAGGCG ATCGTGGAGA TGTTGATATT
TGGAACTATG CTGTTACTCT TGGTTTCCCC GACCTTGGGA AAAAAGGTAA CTTAGCCGGT
ATCATTGCGG GGATGGAACC AAAAGTCACA AGTTCTAGCG TTGCTGGACT AGATAGAGAT
AGAGATACTT CCTATCATGT GGAAGCATTT TATCAATACA AAGTCAGCGA TAATATCACC
ATCACACCAG GCATTATCTG GTTAACATCA CCAGACCACA ATGACAATAA TGATGATGTT
GTTATTGGTG CGTTGAGAAC CACATTTAGT TTCTAA
|
|---|
| Protein sequence | MQKIWKYWLV NPVICSTMLF SGAAAFAGET PATTEINETS ETSKIANAEL ATQQEVMSQV
TSVSQFSDVQ PTDWAFQALQ SLVERYGCIA GYPNGTYRGN RALTRYEFAA GLNACLDRVN
ELIATATAEL VTKEDLATLQ KLQEEFSAEL ATLRGRVDAL EARTSELEAN QFSTTTKLQG
QVVSVISDVL SGDRVNNADI VDTNTTLGVR ARLELVSSFT GQDTLFTRIE ANNITSPDIN
TPEGNLFFAS AAPSTNAAIG TLWYGFPLGK NTQAKLIAVG GAADDLTSTV NIFDGDGAFG
ALTTFGTRNP IYGQIGGTGL GVTHQFSDKL ALSLGYLSGT ANNPSPQNGL FDGAYGALAQ
LTVRPSDRTS VGLTYINSYR QPLATGSNAA TTFQGLDERF SSNSYGLQAS IGLSEKLVLG
GWAGYTNSRI LTGDRGDVDI WNYAVTLGFP DLGKKGNLAG IIAGMEPKVT SSSVAGLDRD
RDTSYHVEAF YQYKVSDNIT ITPGIIWLTS PDHNDNNDDV VIGALRTTFS F
|
|---|
| |