| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4299 |
|---|
| Symbol | |
|---|
| ID | 3680811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 5387391 |
|---|
| End bp | 5389058 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637719648 |
|---|
| Product | cytochrome c oxidase, subunit I |
|---|
| Protein accession | YP_324793 |
|---|
| Protein GI | 75910497 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00437809 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACA TCCCCATAGA CGGCGTTCAA CTCCCTGCGG GGAAGCCTCA CCACCCATCT
CCCGGAGGCT GGAAGGAATA TTTCAGCTTT AGCCATGACC ACAAGGTAAT TGGTATCCAA
TACCTTGTAA CCTCCTTTAT CTTCTTTCTC GTGGGCGGTA TCTTCGCCAT GATACTGCGA
GGAGAACTCA TCACCCCCGA ATCAGACCTC ATCGACCGCA CCGTATATAA CGGAATGTTC
ACCATGCACG GCACTGTGAT GCTGTTCTTG TGGACATTCC CCTCACTCGT TGGGCTAGCT
AACTACCTAG TACCCTTGAT GATTGGGGCG CGGGATATGG CATTTCCTCG CCTCAACGCC
GCCGCCTTCT GGATGGTTCC CGTAGTCGGG ATTCTCTTGA TGGCTAGTTT CTTTGTCCCT
GGTGGCCCAG CCCAATCTGG TTGGTGGGCT TATCCCCCAG TCAGTCTCCA GAATCCCACA
GGTAAGTTAA TTAATGGTCA AGTAATTTGG CTATTGGCTG TTGCTATTTC CGGTGTGTCC
TCAATTATGG GGGCAGTTAA CTTTGTTACC ACCATCGTTA AGATGCGTGC GCCAGGAATG
GGCTTCTTTC GGATGCCTTT GTTTGTTTGG GCAGTCTTTA GCGCTCAAAT TATCCAATTA
TTTGGCTTAC CAGCCCTGAC AGCAGGTGCG GTAATGTTGT TATTAGACAT TACGGTGGGG
ACTAGCTTTT TTGACCCCAG CAAGGGCGGA AATCCCGTGA TGTTTCAACA TTACTTCTGG
TTCTATTCCC ACCCGGCTGT TTACGTCATC ATTTTGCCCA TCTTCGGTAT CTTCTCAGAA
ATCTTTCCTG TCTACTCTCG TAAACCATTA TTTGGTTACA AGGTAGTGGC GATTTCTTCG
ATGTTAATTG CCGTAGTTAG CGCCATTGTT TGGGTACACC ATTTATACGT CAGTGGTACA
CCTGCTTGGA TGCGGATGTT TTTCATGCTG ACGACGATGT TAGTATCTGT TCCCACAGGT
ATTAAGGTAT TTGCTTGGGT TGCAACTATC TGGGGCGGAA AAATTCGACT CAACACCCCC
ATGTTGTTCG CCTTGGGTGG ACTAATTTTA TTTGTCTTCG CCGGTATTGT CGGCATTATG
CTTTCTTCTG TACCCGTGGA TGTCCACGTC AACAACACTT ATTTTGTCGT CGGACACTTC
CACTACGTCC TCTTCGGAAC CGTGACGATG GGTATGTATG CAGCCCTCTA TCACTGGTTC
CCCAAAATGA CCGGCAGAAT GTACTACGAA GGCTGGGGTA AACTACACTT CTGGTTGACA
TTCATCGGTA CTAACCTCAA CTTCTTCCCC ATGCACCCCT TAGGTTTACA AGGGATGCTA
CGCCGAGTTT CTTCCTACGC ACCAGAATAT GAAGGCTGGA ATATCGTTGC TAGTCTTGGT
GCATTCTTGT TAGGTATGTC TACTTTGCCC TTCATCTTCA ATATGGTGGT TTCTTGGATG
CACGGTGAGA AAGCACCAGA TAATCCTTGG CGCGCTATTG GTTTGGAGTG GTTGGTTGCT
TCTCCACCAC CTGTAGAGAA CTTTGAAGAA ATCCCCGTCG TAATTTCTGA ACCTTATGGT
TACGGCAAAT CAGAACCATT AATTGCAGAA GCTAATAGTC ATCACTAA
|
|---|
| Protein sequence | MTNIPIDGVQ LPAGKPHHPS PGGWKEYFSF SHDHKVIGIQ YLVTSFIFFL VGGIFAMILR
GELITPESDL IDRTVYNGMF TMHGTVMLFL WTFPSLVGLA NYLVPLMIGA RDMAFPRLNA
AAFWMVPVVG ILLMASFFVP GGPAQSGWWA YPPVSLQNPT GKLINGQVIW LLAVAISGVS
SIMGAVNFVT TIVKMRAPGM GFFRMPLFVW AVFSAQIIQL FGLPALTAGA VMLLLDITVG
TSFFDPSKGG NPVMFQHYFW FYSHPAVYVI ILPIFGIFSE IFPVYSRKPL FGYKVVAISS
MLIAVVSAIV WVHHLYVSGT PAWMRMFFML TTMLVSVPTG IKVFAWVATI WGGKIRLNTP
MLFALGGLIL FVFAGIVGIM LSSVPVDVHV NNTYFVVGHF HYVLFGTVTM GMYAALYHWF
PKMTGRMYYE GWGKLHFWLT FIGTNLNFFP MHPLGLQGML RRVSSYAPEY EGWNIVASLG
AFLLGMSTLP FIFNMVVSWM HGEKAPDNPW RAIGLEWLVA SPPPVENFEE IPVVISEPYG
YGKSEPLIAE ANSHH
|
|---|
| |