Gene Ava_4207 details

Gene Information

• Locus tag: Ava_4207
• Symbol: rpoB
• ID: 3680951
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Anabaena variabilis ATCC 29413
• Kingdom: Bacteria
• Replicon accession: NC_007413
• Strand: +
• Start bp: 5269721
• End bp: 5273074
• Gene Length: 3354 bp
• Protein Length: 1117 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637719554
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_324701
• Protein GI: 75910405
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATTAGCG AAAATTATAT TGAACCCGCC TTTCTGTTGC CCGACTTGAT TGAAATCCAG 
CGTTCAAGCT TTCGCTGGTT TTTAGAAGAA GGGCTGATCG AAGAACTTAA CTCCTTTAGT 
CCTATTACAG ACTATACAGG CAAATTAGAA CTGCATTTTT TAGGACATAA TTACAAACTT 
AAGGAGCCAA AGTACAGCGT TGAAGAAGCG AAACGCCGCG ACAGTACTTA CGCTGTACAG 
ATGTATGTCC CTACCCGCCT ATTAAATAAA GAAACCGGGG ATATTAAAGA GCAGGAAGTA 
TTTATCGGGG ATCTACCTTT GATGACCGAT CGCGGCACGT TTATTATTAA CGGAGCCGAA 
AGGGTAATTG TCAATCAAAT TGTGCGATCG CCTGGAGTTT ACTACAAATC AGAAATCGAC 
AAAAACGGTC GCCGGACATA TTCAGCCAGC CTCATCCCCA ACCGGGGCGC ATGGCTAAAA 
TTTGAAACAG ACCGGAACGA TTTGGTATGG GTACGCATCG ACAAAACCCG CAAACTCTCA 
GCCCAAGTAC TATTAAAAGC GCTCGGCTTA TCAGATAACG AAATTTTTGA TGCCCTGCGC 
CACCCAGAGT ACTTCCAAAA AACCATCGAG AAAGAAGGGC AGTTTTCCGA AGAAGAAGCT 
CTGATGGAGT TATATCGTAA ACTGCGACCA GGCGAACCAC CAACCGTACT AGGTGGGCAA 
CAATTGTTAG ACTCCCGCTT CTTCGACCCC AAACGCTATG ACTTGGGTCG AGTCGGTAGA 
TACAAACTCA ACAAAAAACT ACGCCTATCA GTCCCCGATA CCGTCCGCGT CCTCACCTCT 
GGCGATATTT TGGCTGCGGT CGATTACCTG ATCAACCTGG AATATGACAT CGGTAGTATT 
GATGACATCG ACCACTTAGG CAACCGTCGG GTAAGAAGCG TTGGTGAATT GCTACAAAAC 
CAAGTCAGAG TAGGCTTAAA CCGCCTAGAA AGAATCATTC GGGAACGGAT GACCGTATCT 
GATGCGGAAG TATTAACACC AGCATCCTTG GTTAACCCCA AACCATTGGT AGCCGCCATC 
AAAGAATTCT TTGGCTCTAG CCAATTGAGT CAGTTCATGG ATCAAACCAA TCCTTTAGCC 
GAACTGACCC ACAAACGCCG TCTGTCAGCC CTTGGCCCTG GTGGTTTAAC CAGAGAACGG 
GCGGGTTTTG CTGTGCGAGA TATTCACCCC TCCCACTACG GACGGATTTG TCCCATTGAG 
ACACCAGAAG GCCCCAACGC CGGTTTGATT GGTTCCTTAG CCACCCACGC CCGCGTTAAC 
CAATACGGCT TCTTAGAAAC GCCATTTAGA CCAGTAGAAA ACGGCCGGGT GAGATTTGAT 
CAACCCGCAG TCTACATGAC CGCCGACGAA GAGGACGACC TGCGGGTAGC ACCAGGGGAT 
ATTCCTGTAG ATGAAAATGG CCACATTATT GGTCCCCAAG TACCAGTCCG CTATCGCCAG 
GAATTCTCCA CCACAACACC GGAACAAGTA GACTACGTAG CCGTATCACC AGTACAGATC 
GTCTCTGTAG CTACCAGTAT GATTCCCTTC TTGGAACATG ACGACGCGAA CCGCGCCCTC 
ATGGGTTCCA ATATGCAACG GCAAGCTGTA CCTCTACTGA AACCAGAGCG TCCGCTAGTG 
GGAACAGGCT TAGAAGCCCA AGGCGCGAGA GACTCAGGGA TGGTAATTGT CTCCCGTACC 
GATGGGGACG TTGTCTACGT GGATGCTACA GAAATACGTG TCCGAGTTAG TGGGCAATTA 
CCAGCAGCTA GCGGCAAAAG CACTGACAAC GGACAACTGA CCAGTCAGAA AGGACAAGAA 
ATTCGCTATA CAGTATCCAA ATATCAGCGT TCTAACCAAG ATACCTGTCT CAACCAAAAA 
CCCCTGGTAC GGATTGGTGA GCGTGTAGTT GCTGGTCAGG TGCTAGCTGA TGGCTCCTCC 
ACGGAAGGCG GGGAATTGGC ACTGGGACAA AATATCGTCG TCGCTTATAT GCCTTGGGAA 
GGCTATAACT ACGAAGACGC GATTTTAATT TCCGAGCGAC TGGTACAGGA TGATATTTAC 
ACCTCAATTC ACATTGAAAA ATATGAAATT GAAGCCCGCC AGACAAAACT AGGCCCAGAA 
GAAATTACCA GAGAAATTCC TAACGTCGGG GAAGATGCCC TACGTCAGTT AGATGAACAG 
GGAATCATTC GGATTGGGGC TTGGGTAGAA GCTGGAGACA TACTGGTAGG CAAGGTGACA 
CCAAAAGGTG AATCCGATCA GCCACCAGAA GAAAAGCTAC TACGGGCAAT TTTCGGGGAA 
AAAGCACGGG ATGTAAGAGA TAACTCCCTC CGTGTACCCA ACGGCGAAAA AGGGCGGGTC 
GTAGACGTGC GCTTGTTTAC CCGCGAACAA GGGGACGAAC TACCACCAGG AGCCAATATG 
GTAGTCCGGG TGTATGTAGC CCAGAAGCGG AAAATCCAAG TAGGGGATAA AATGGCAGGT 
CGCCACGGTA ATAAAGGGAT TATTTCCCGC ATATTGCCCA TAGAAGATAT GCCTTACTTA 
CCCGACGGCT CCCCTGTGGA TATTGTCCTC AACCCCCTTG GTGTACCCAG CCGGATGAAC 
GTGGGACAGG TATTTGAGTG TCTATTGGGT TGGGCTGGTC ATACCTTGGG TGTCAGGTTT 
AAGATTACTC CCTTCGATGA AATGTACGGA GAAGAGTCAT CTCGCCGCAT TGTGCATGGC 
AAATTGCAAG AAGCCAGAGA CGAGACAGGG AAAGATTGGG TTTATAACCC AGATGACCCA 
GGCAAAATCA TGGTGTTCGA TGGTCGTACA GGGGAACCCT TTGATCGACC AGTAACTATC 
GGCGTAGCTT ATATGCTGAA ACTGGTACAC CTAGTAGACG ATAAGATTCA CGCTCGTTCT 
ACAGGCCCTT ACTCCTTGGT GACTCAGCAG CCATTGGGTG GAAAAGCCCA ACAAGGTGGT 
CAGCGCTTTG GAGAAATGGA AGTATGGGCA TTGGAAGCTT TCGGTGCAGC TTATACCTTG 
CAGGAATTGC TGACGGTGAA ATCAGACGAT ATGCAGGGAC GGAACGAAGC ATTAAATGCG 
ATCGTTAAAG GCAAGGCCAT TCCTCGACCT GGAACACCAG AATCCTTCAA GGTATTGATG 
CGAGAACTGC AATCCTTGGG GTTAGACATT GCCGTACATA AAGTAGAAAC CCAAGCTGAT 
GGTAGTTCCT TGGATGTCGA AGTCGATTTA ATGGCAGACC AATTAGCTCG CCGTACACCA 
CCCCGACCAA CCTATGAATC GCTATCCCGC GAATCATTGG ACGATGACGA ATAG 

 

Protein sequence

MISENYIEPA FLLPDLIEIQ RSSFRWFLEE GLIEELNSFS PITDYTGKLE LHFLGHNYKL 
KEPKYSVEEA KRRDSTYAVQ MYVPTRLLNK ETGDIKEQEV FIGDLPLMTD RGTFIINGAE 
RVIVNQIVRS PGVYYKSEID KNGRRTYSAS LIPNRGAWLK FETDRNDLVW VRIDKTRKLS 
AQVLLKALGL SDNEIFDALR HPEYFQKTIE KEGQFSEEEA LMELYRKLRP GEPPTVLGGQ 
QLLDSRFFDP KRYDLGRVGR YKLNKKLRLS VPDTVRVLTS GDILAAVDYL INLEYDIGSI 
DDIDHLGNRR VRSVGELLQN QVRVGLNRLE RIIRERMTVS DAEVLTPASL VNPKPLVAAI 
KEFFGSSQLS QFMDQTNPLA ELTHKRRLSA LGPGGLTRER AGFAVRDIHP SHYGRICPIE 
TPEGPNAGLI GSLATHARVN QYGFLETPFR PVENGRVRFD QPAVYMTADE EDDLRVAPGD 
IPVDENGHII GPQVPVRYRQ EFSTTTPEQV DYVAVSPVQI VSVATSMIPF LEHDDANRAL 
MGSNMQRQAV PLLKPERPLV GTGLEAQGAR DSGMVIVSRT DGDVVYVDAT EIRVRVSGQL 
PAASGKSTDN GQLTSQKGQE IRYTVSKYQR SNQDTCLNQK PLVRIGERVV AGQVLADGSS 
TEGGELALGQ NIVVAYMPWE GYNYEDAILI SERLVQDDIY TSIHIEKYEI EARQTKLGPE 
EITREIPNVG EDALRQLDEQ GIIRIGAWVE AGDILVGKVT PKGESDQPPE EKLLRAIFGE 
KARDVRDNSL RVPNGEKGRV VDVRLFTREQ GDELPPGANM VVRVYVAQKR KIQVGDKMAG 
RHGNKGIISR ILPIEDMPYL PDGSPVDIVL NPLGVPSRMN VGQVFECLLG WAGHTLGVRF 
KITPFDEMYG EESSRRIVHG KLQEARDETG KDWVYNPDDP GKIMVFDGRT GEPFDRPVTI 
GVAYMLKLVH LVDDKIHARS TGPYSLVTQQ PLGGKAQQGG QRFGEMEVWA LEAFGAAYTL 
QELLTVKSDD MQGRNEALNA IVKGKAIPRP GTPESFKVLM RELQSLGLDI AVHKVETQAD 
GSSLDVEVDL MADQLARRTP PRPTYESLSR ESLDDDE