| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4190 |
|---|
| Symbol | |
|---|
| ID | 3680993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 5248193 |
|---|
| End bp | 5249308 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637719537 |
|---|
| Product | xylose isomerase-like TIM barrel |
|---|
| Protein accession | YP_324684 |
|---|
| Protein GI | 75910388 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.720259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00898811 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTGACAA AGAATGAGCG GAAGACAAAT AAATCATCGA TTTTGTCCAA AATCCAAAAA
ATTAGCCGTT TATTTGCCCT ATCATTTGTC TTTATCTTTG TGGGCATAAA TAGCTTAACA
CTTCCCGCTA CGGCTGCTCC CAGCGGAAAC AATTCAGTTC TAGTATCTCT GGTTTCTCCT
TCATCTAAAC CTACACTCTT AAACCCAACA TTTGACCCCA AAAAAGTAGA TTTGGGCATT
ACTCCCACTG GTTGGAGTAA TAGTGATGAC CTGACTATTG ATCTTAATCC TCCTATCCCT
TACGAGCAGA TTTTAAGTGA AATGGCACTA TCTGGCTTCA AGGGTTCGCA AATGTCACCT
AAATTTCCGA AAAAAATAAA GGATTTAAAA AAAGAGTTAA AACTTCGTGA GTTGAAAATT
TCTGAACCTT GGGTAGGAAC TTTATTCACC GAGGGAAAGG AAGATGAAAC CCTTAAAGAA
TTCGACAAAC AAGTGGCTTT CATGAAGGAA ATGAAAGGCA AAAATATTGT TGTTGCTGAA
TTGGGTGGTG CTGTTCATCA AAAAAAATGT GTAGACCCTC TAGTTAACAG ACCTCGTTTT
ACCGACGCGC AATGGGCAGA TTTATTTAAG GGGCTAAATA AACTGGGTTC ATTGGCAAAA
GAAAACGGTA TGCAGTTGGT TTATCACCCT CACATTGGTA CGGGAGTAGA AGACTTCGCT
GATATTGACC GTTTGATGCA AGGTACTGAT TCCGAAAATG TTAAGCTGCT TCTCGATACT
GGTCATTTGT ACTATGCAGA TGTTGATCCT CTAGCAGTCA CTAAAAAGTA TGCTAACCGG
ATCAAACACG TCCATCTAAA AAATATCCGT CAACCAATTT TAGATGAATC GAAAAAAACT
GGTCGTAGCT TTTTAGATTC TATCCGAGCC GGGATATTTA CTGTTCCGGG AGATACAGAC
GGTGCAATTG ATTTTCAGCC AATTTTACAA GAACTTGCTA AAGCTAAATA TGAAGGATGG
CTAATGGTAG AGGCAGAACA AGATCCAAAC AAAGCTAATC CTTTAACATA TGCTTTAATG
GCTCGTAATT ATTTACGCCA AGTGACCGAT TTATAA
|
|---|
| Protein sequence | MLTKNERKTN KSSILSKIQK ISRLFALSFV FIFVGINSLT LPATAAPSGN NSVLVSLVSP
SSKPTLLNPT FDPKKVDLGI TPTGWSNSDD LTIDLNPPIP YEQILSEMAL SGFKGSQMSP
KFPKKIKDLK KELKLRELKI SEPWVGTLFT EGKEDETLKE FDKQVAFMKE MKGKNIVVAE
LGGAVHQKKC VDPLVNRPRF TDAQWADLFK GLNKLGSLAK ENGMQLVYHP HIGTGVEDFA
DIDRLMQGTD SENVKLLLDT GHLYYADVDP LAVTKKYANR IKHVHLKNIR QPILDESKKT
GRSFLDSIRA GIFTVPGDTD GAIDFQPILQ ELAKAKYEGW LMVEAEQDPN KANPLTYALM
ARNYLRQVTD L
|
|---|
| |