Gene Ava_4176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_4176 
Symbol 
ID3681037 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp5225621 
End bp5226622 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content38% 
IMG OID637719523 
Producthypothetical protein 
Protein accessionYP_324670 
Protein GI75910374 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000217029 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGAACTG TTTACGTTAC ACAGGATGAT TCATTTATTA GCAAAATTGA TGAACGTCTG 
AATGTTAAAT TTGAGAAGAA GGTAATTTTA GACGTACCTT TAATTAAAAT TGATGGGTTA
GTTGTGATGG GAAGGGCTAG TATTTCCCCT GCGGCTATTT TTGAACTCAT TGATAAGAAA
ATTCCCCTCA CATTTCTCAC CAATAACGGT AAATATCTTG CTAGTTTAGA GCCAGAAATG
GGTAAAAATA TTTTCGTCCG TGCTGCTCAA TGGAAAGCTG CTGGAGAATC AGACCAAGCA
ATTCATGTTA CCCAAGGTTT TGTTAGAGGT AAACTGAAAA ATTACCGCCA TAGTTTACTA
GAAGCACAGC GCAGATATGA GGTTGATTTA AATAGTAATA TCAGTCAATT ATCTCATGCG
ATCACCTCCA TCGACAAAGC CAATTCAATT AATACAATCA GGGGTTTAGA AGGTGCTGGT
AGTGCTGCCT ATTTTGGCTG CTTTAATCAA CTAATCCGAG TTGATAATTT CAGCTTTCAT
ACCCGCAACC GTCGCCCACC TATAGACCCG GTAAATTCAC TCTTGAGTTT AGGATATTCC
TTACTACGTC ACGATATTCA AGGAGCATTA AATATCGTCG GTTTCGACCC CTATTTAGGA
TACCTACATA CAGAAAGATA TGGTAGACCT TCTCTAGCAT TAGATTTAAT GGAAGAGTTT
CGACCCTTAA TAGTCGATGC TGTTGTTCTC ACAGCAATTA ATCGCCGGAT GCTTTCACCA
AAAGACTTTG TTACTGAACC TATAAGTAAC GCTGTTTCAC TGACTAAAGA AGGTTTACAT
ATTTTCTTGA GATTATATCA AGAAAAGAAA CAAACCCAAT TCAAACATCC TGTTATGCAG
AAAAAGTATA CCTATCAAGA AACTTTTGAA ATTCAAGCTA GACTCCTAGC TAAATACCTC
ATGGGAGAAC TAGATAAATA CCCCCCTTTG GTCATGAGAT AG
 
Protein sequence
MGTVYVTQDD SFISKIDERL NVKFEKKVIL DVPLIKIDGL VVMGRASISP AAIFELIDKK 
IPLTFLTNNG KYLASLEPEM GKNIFVRAAQ WKAAGESDQA IHVTQGFVRG KLKNYRHSLL
EAQRRYEVDL NSNISQLSHA ITSIDKANSI NTIRGLEGAG SAAYFGCFNQ LIRVDNFSFH
TRNRRPPIDP VNSLLSLGYS LLRHDIQGAL NIVGFDPYLG YLHTERYGRP SLALDLMEEF
RPLIVDAVVL TAINRRMLSP KDFVTEPISN AVSLTKEGLH IFLRLYQEKK QTQFKHPVMQ
KKYTYQETFE IQARLLAKYL MGELDKYPPL VMR