Gene Ava_4090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_4090 
Symbol 
ID3681555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp5083766 
End bp5084332 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content44% 
IMG OID637719440 
Productcold-shock DNA-binding protein family protein 
Protein accessionYP_324588 
Protein GI75910292 
COG category[K] Transcription 
COG ID[COG1278] Cold shock proteins 
TIGRFAM ID[TIGR00741] ribosomal subunit interface protein 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.25862 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCATTC CACTACAAAT CACCTTTCAC AACATCCCAC CATCAGAAGC GGTAGAAGCA 
AAAATTCGCT CCTTAGCTGA TAAACTAGAG CATTTTTATA ACCGGATTAC GAGCTGTCGA
GTCATAGTTG ATGCCCCACA TCGACATCAA CGTAACGGTA AACTTTATCA GGTGCGAATT
GACATCACTG TGCCAACAGG GGAAATCGTT GTCAACCGTG ACCCACCTGA ACATCAATCC
CACGAGGATA TTTATGTAGC AATTCGTGAT GCTTTTGATG CAGCCAAGCG TAAACTGCAA
GACCACACCA GTATGCTGCG TCAGGAAACC AAAACTCATG AAGAACAGCC TCATGGACGA
ATTACGTCTT TGTTCTCTGA TGAAGGCTAC GGTTTTATCG AAACACCTGA TGGTAGCGAA
GTTTATTTTC ACCGCAATAG TCTATTCAAT GGTGATTTTG AGCAGTTGCA GGTGGGAGAC
GAAATTCGTT TTGCACAGGA AGAAGGTGAT AAAGGACCGC AAGCTAGTAC TGTTAGATTG
ATTGGTAAGC ATCGCCTACA AGGTTAG
 
Protein sequence
MIIPLQITFH NIPPSEAVEA KIRSLADKLE HFYNRITSCR VIVDAPHRHQ RNGKLYQVRI 
DITVPTGEIV VNRDPPEHQS HEDIYVAIRD AFDAAKRKLQ DHTSMLRQET KTHEEQPHGR
ITSLFSDEGY GFIETPDGSE VYFHRNSLFN GDFEQLQVGD EIRFAQEEGD KGPQASTVRL
IGKHRLQG