Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_4090 |
Symbol | |
ID | 3681555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | - |
Start bp | 5083766 |
End bp | 5084332 |
Gene Length | 567 bp |
Protein Length | 188 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637719440 |
Product | cold-shock DNA-binding protein family protein |
Protein accession | YP_324588 |
Protein GI | 75910292 |
COG category | [K] Transcription |
COG ID | [COG1278] Cold shock proteins |
TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.25862 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATCATTC CACTACAAAT CACCTTTCAC AACATCCCAC CATCAGAAGC GGTAGAAGCA AAAATTCGCT CCTTAGCTGA TAAACTAGAG CATTTTTATA ACCGGATTAC GAGCTGTCGA GTCATAGTTG ATGCCCCACA TCGACATCAA CGTAACGGTA AACTTTATCA GGTGCGAATT GACATCACTG TGCCAACAGG GGAAATCGTT GTCAACCGTG ACCCACCTGA ACATCAATCC CACGAGGATA TTTATGTAGC AATTCGTGAT GCTTTTGATG CAGCCAAGCG TAAACTGCAA GACCACACCA GTATGCTGCG TCAGGAAACC AAAACTCATG AAGAACAGCC TCATGGACGA ATTACGTCTT TGTTCTCTGA TGAAGGCTAC GGTTTTATCG AAACACCTGA TGGTAGCGAA GTTTATTTTC ACCGCAATAG TCTATTCAAT GGTGATTTTG AGCAGTTGCA GGTGGGAGAC GAAATTCGTT TTGCACAGGA AGAAGGTGAT AAAGGACCGC AAGCTAGTAC TGTTAGATTG ATTGGTAAGC ATCGCCTACA AGGTTAG
|
Protein sequence | MIIPLQITFH NIPPSEAVEA KIRSLADKLE HFYNRITSCR VIVDAPHRHQ RNGKLYQVRI DITVPTGEIV VNRDPPEHQS HEDIYVAIRD AFDAAKRKLQ DHTSMLRQET KTHEEQPHGR ITSLFSDEGY GFIETPDGSE VYFHRNSLFN GDFEQLQVGD EIRFAQEEGD KGPQASTVRL IGKHRLQG
|
| |