| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_4022 |
|---|
| Symbol | |
|---|
| ID | 3681254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 5006036 |
|---|
| End bp | 5007037 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637719374 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_324522 |
|---|
| Protein GI | 75910226 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.785629 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA CCTCAATCAC CTATACATTG TCTGCTGTTT TGCTGCTGGG CTTTTCGATA
CCTTTAGTAT TTGCACAAAC ACCGGATTCT GGTCTCTCTG CTGATTGCCA AATGCCGATC
CCACCAAATG TTAATTCTGT AGACCATTTC TTAGGTATGG GACACTTTCA GCAAGACTGT
AAAAAAGATT TGTCGGCGGC GGTTGCTGCT TTCACCCAAG CGATTAAACT TAATCCCCAA
GCTGAAAAAC CATACTATCA TCGAGCGAAT GCTTACGCTG CAATGGGTAA CTATCAGGCA
GCCGTGACAG ACTATACCGA AGTGATTAGG CAAAATACGG GTAGATTTGG TTTGAGTAGT
GCTGCATATT GGAATAGAGC TAGAGCTTAT GAAAAGTTGG GGGAAGAACA GAAAGCAATT
TCCGATTTAA CTCAATTAAT TGGGAAGAAT ACAAGTTCTA ATGCTGATGA ATATTTATTA
AGAGCGAATC TTTACAGGGA TTTGGGAAAT AAAGAAAGTG CGATCGCTGA CTACAAGATA
GCAGAAAAAC TCTTACAGCA ATACACGGAT GGTGTTTTTG ACACTGGGAT GATGGACACC
AGATATCAAC AGATGTTGGA TCAAGTCAGA AATGAGCTAT CAAGTATGGG TGTAGCTGTC
ACAGTACCCA AGACTACTAC TGGTAATATT TTACGCACAA TTGCTAAAAC AGAAGTTGAA
CGGGCATTAA ATTTAGCTAA ACTCCAGTCT CAACATCCTA CCGTGAAAAA TTTTGATGCT
CAACTTCAGG ATTTGTATAA GCAACTAGCA AACACACAAC CACAAGTAGA CCAAAGGGTA
GTAAAAAACC TGATAGCCAA TGCGGCCTAT GAGAAAATAG ATACTTTAAA AATAGAGCGA
TCGCAACTCT TGACACAATA TACCCTTCAC AGTCCCGTCA TTGGGGTAAT TGATAGTCAG
ACCAGCGAAT TAGAATCATT AATTCGTCGT AATAAATTTT AA
|
|---|
| Protein sequence | MKFTSITYTL SAVLLLGFSI PLVFAQTPDS GLSADCQMPI PPNVNSVDHF LGMGHFQQDC
KKDLSAAVAA FTQAIKLNPQ AEKPYYHRAN AYAAMGNYQA AVTDYTEVIR QNTGRFGLSS
AAYWNRARAY EKLGEEQKAI SDLTQLIGKN TSSNADEYLL RANLYRDLGN KESAIADYKI
AEKLLQQYTD GVFDTGMMDT RYQQMLDQVR NELSSMGVAV TVPKTTTGNI LRTIAKTEVE
RALNLAKLQS QHPTVKNFDA QLQDLYKQLA NTQPQVDQRV VKNLIANAAY EKIDTLKIER
SQLLTQYTLH SPVIGVIDSQ TSELESLIRR NKF
|
|---|
| |