| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3962 |
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| Symbol | |
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| ID | 3682559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 4908964 |
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| End bp | 4910580 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637719314 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_324462 |
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| Protein GI | 75910166 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000000243935 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0037815 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCTATTTC ACATTTTGGC GATCGCTGGG TCAATGGCTA TCACCGTTGT CTCTATGCCA
AAAGCTACAG CCCAGATACC GTTTTTACCA CAACTACAAT TACCAAGTAG TATCAGCAAC
GAATCAGATA GTAGAGTTGT ATCGGACTGG GTGTATTTGG ATGGTCGCCG TTTATTTCAG
ATAGCAGCAA CCAAAACCAA TCTTGCAGAA CGTAGAGAAA ATATTGAGCA GAATTTGCAA
GAAATCACTC AAAATTATGT GCGTTCGTCT GCCACAGAAG CAGATATCCA AGTCCGCACA
CTCAACGGAT TACCAGTAAT TTACGTCAAT AATCGCTACT TAATGACCAT TACTTCCCAG
GATGCTAGCT TGGGAGAAGG AGATGCGTTC ACATTAGCGG AAAGTATTAA AGAGTCGTTA
AAGCAAGACT TACAACGAGC CAGACGAGAA CGGCAAACTC AATTTATTAT CGACCAGGCG
AAAATTGCGG GAGCGATCGC CTTGGCTATG ATGATCGCCA GTTGGGGTAC AACACACTGG
CAACGTCGCG CCTTGAGGCA TGGTGTAAAA TCTAATGTTT CCTCACCACC AGTTGCCAAA
CAGATTACAA CTCAATTAAA TCAACAGCAG CATCAACATC TGCAAGAAGT CAAAAGACGG
TTGTTTCAAT TCACCCAGGT GGGAATTTGG GGAAGTGGAA ATTTGATCAT CTTGGGTTTA
TTTCCCTACA CCCGCACCTT TCAAGTAGCT ATTTTCACCG CAGCCCAAAT TCCTTTACGA
TTAGCTGTGG TCGGCGTGGG AACTTATGTA GCGATTCGTT TGACCTATGC GTTAATTGAC
CGCTTTACTA CCACTCTCAT CAGCAGTGGT GCTTTACTAA CGCCTGAAGC CTCAGAACGG
ATGCAACTGC GTGTTTCTAC ATTTTCCGGT GTGACCAAAA GTATTGCCAC TATCGTCTGT
ATAGGAGTCG GGATTTTGCT GGCGCTGGTA GCCTTGGGTA TAGATATCGT TCCTTTGCTA
GCTGGTGCAA GTTTAGTCGG TGTGGCCGTG TCCTTGGCTT CCCAGAACTT AATTAAGGAT
GCGATTAATG GCTTTTTGAT TATCCTAGAA GACCAGTACG CTTTGGGTGA CGTGATTAAT
GTCGGCAATG TTGGCGGCTT AGTCGAAAAT CTCAATTTGC GAATGACTCA GGTACGCGAC
TCCGAAGGAC GCTTAATTAC AATTCCCAAC AGTGAAATTA AAATCGTCGC CAATCTCTCT
AGTCGCTGGT CAAGAGCCGA TTTAACCATT CCTGTAGATT ATCAGGCTGA TATTGACCAA
GCTTTAAAGT TGATTAGGGA TGTAGCTTTA AAAATGGATC AAGACCCCCT TTGGCAAAGA
CAAATTATCG AAACACCGCA AGTATTGGGA ATCGATAACT TTGGCGATCG CGGTTTAATT
ATTCGCGTCT GGATTAAAAC ACAACCCCTC AAACAATGGG ATGTAGCCAG AGAATACCGC
CGCCGTCTGA AAATCGCCTT CGACAAAGCC GGCATTTTTA TTCCCGTACC TCAACAAGCC
ATCTGGGTGA ACGAAAATCA GCTACCGCCT CCTCAGGAGA ACGGTAAGGC TAGCTAA
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| Protein sequence | MLFHILAIAG SMAITVVSMP KATAQIPFLP QLQLPSSISN ESDSRVVSDW VYLDGRRLFQ
IAATKTNLAE RRENIEQNLQ EITQNYVRSS ATEADIQVRT LNGLPVIYVN NRYLMTITSQ
DASLGEGDAF TLAESIKESL KQDLQRARRE RQTQFIIDQA KIAGAIALAM MIASWGTTHW
QRRALRHGVK SNVSSPPVAK QITTQLNQQQ HQHLQEVKRR LFQFTQVGIW GSGNLIILGL
FPYTRTFQVA IFTAAQIPLR LAVVGVGTYV AIRLTYALID RFTTTLISSG ALLTPEASER
MQLRVSTFSG VTKSIATIVC IGVGILLALV ALGIDIVPLL AGASLVGVAV SLASQNLIKD
AINGFLIILE DQYALGDVIN VGNVGGLVEN LNLRMTQVRD SEGRLITIPN SEIKIVANLS
SRWSRADLTI PVDYQADIDQ ALKLIRDVAL KMDQDPLWQR QIIETPQVLG IDNFGDRGLI
IRVWIKTQPL KQWDVAREYR RRLKIAFDKA GIFIPVPQQA IWVNENQLPP PQENGKAS
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