| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3956 |
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| Symbol | aksA |
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| ID | 3682553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 4905646 |
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| End bp | 4906779 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637719308 |
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| Product | trans-homoaconitate synthase |
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| Protein accession | YP_324456 |
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| Protein GI | 75910160 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR02660] homocitrate synthase NifV |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.000442748 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00302646 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAATAAAG TTCTCATTAA TGACACTACA TTACGTGATG GCGAACAAGC CGCAGGTGTT
GTTTTTACCT TAGAAGAGAA AGTGGCGATC GCTAAATTTC TCGATACCAT CGGCGTACCC
GAATTAGAAG TGGGGATTCC GGCGATGGGT GAGGAAGAAA TGCGGGCGAT CTGCGCCATT
TCTAACTTAG GTTTAAAAGC TAACCTCCTG GCGTGGAACC GCGCCGTAAT TTCAGATATC
AAAGCTTCTG TTGCTTGCGG GATGGAGCGA GTGCATATTG CGATCCCTGT TTCCGGGATT
CAAATCGCCG CAAAATTCCA CGGACAATGG CGGGTAAGTC TGCAAAGACT CAAAGATTGT
ATCAGCTTCG CAGTTGATCA AGGTCTTTGG GTAGCAGTCG GGGGGGAAGA TTCCTCTAGA
GCTGATGAAA ACTTCCTCTT GGATGTAGCA CTATACGCTC AAGAATGGGG TGCATCTCGA
TTCCGCTTCT GTGACACAGT AGGAGTCCTC GATCCTTTCA CCACCTACGG AAAAGTTAAG
CTACTCGTCT CAGCTTTAAC AATTCCTGTA GAAGTCCATA CTCACAATGA TTTTGGTATG
GCGACAGCTA ACGCCCTAGC AGGAATTAAA GCTGGAGCCG CATCTGTCAA TACTACCGTG
ATTGGCTTGG GTGAAAGAGC AGGTAACGCC GCCTTAGAAG AAGTCGTTAT GGCTATCAAA
CGCATCTATG GCGTAGATAT GGGGATTGAC ACACCCCGTT TGTTGGAATT GTCCCAACTG
GTAGCAGCCG CCTCTGGTGC TAACGTACCA CCTTGGAAGG CGATCGTTGG TGAAAATACC
TTTGCTCACG AATCAGGTAT TCATGCACAT GGTGTACTGC AAAATCCTGA TACCTATGAA
CCATTCGCAC CTGAAGAAGT CGGTTGGGAA CGCCGCTTAG TTGTAGGTAA GCATTCTGGC
AGACATTCAG TCTCCAACTT GCTAGAACAG CACGGGATAT TTTTGAACCC AGAAGAAACC
CAGTCTGTTT TAGATGCAGT GCGCCAACAG TCAGTTAAGA AAAAACGCAG TTTGACTACA
GAAGAACTGT TGAACTTGGT CAAAGAACAG AGGTATTCTC ATGCAGCGCG ATGA
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| Protein sequence | MNKVLINDTT LRDGEQAAGV VFTLEEKVAI AKFLDTIGVP ELEVGIPAMG EEEMRAICAI
SNLGLKANLL AWNRAVISDI KASVACGMER VHIAIPVSGI QIAAKFHGQW RVSLQRLKDC
ISFAVDQGLW VAVGGEDSSR ADENFLLDVA LYAQEWGASR FRFCDTVGVL DPFTTYGKVK
LLVSALTIPV EVHTHNDFGM ATANALAGIK AGAASVNTTV IGLGERAGNA ALEEVVMAIK
RIYGVDMGID TPRLLELSQL VAAASGANVP PWKAIVGENT FAHESGIHAH GVLQNPDTYE
PFAPEEVGWE RRLVVGKHSG RHSVSNLLEQ HGIFLNPEET QSVLDAVRQQ SVKKKRSLTT
EELLNLVKEQ RYSHAAR
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