Gene Ava_3915 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_3915 
Symbol 
ID3683492 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp4868874 
End bp4869776 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content44% 
IMG OID637719267 
ProductFe-S cluster assembly protein NifU 
Protein accessionYP_324415 
Protein GI75910119 
COG category[C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0694] Thioredoxin-like proteins and domains
[COG0822] NifU homolog involved in Fe-S cluster formation 
TIGRFAM ID[TIGR02000] Fe-S cluster assembly protein NifU 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGGACT ACACAGATAA AGTATTAGAA CTGTTTTACG ATCCCAAGAA TCAGGGAGTC 
ATTGAAGATA ACGGCGAACC TGGCGTGAAG GTTGCCACCG GTGAAGTTGG GAGTATTGCT
TGCGGTGATG CGCTGAGACT GCACATCAAG GTGGAAGTAG AATCTGATAA GATTGTTGAC
TCCCGCTTCC AGACCTTTGG CTGCACAAGT GCGATCGCTT CTTCTAGCGC ATTAACAGAA
ATGATTAAGG GTCTGACTTT AGATGAAGCC CTGAAAGTTT CTAATAAAGA CATTGCTGAT
TACCTCGGTG GCTTGCCAGA AGCCAAAATG CACTGCTCTG TGATGGGGCA AGAAGCTCTG
GAAGCTGCTA TCTATAACTA TCGTGGCATT CCTCTCGCTA CTCACGATGA CGAAGATGAA
GGTGCATTAG TTTGTACTTG CTTCGGTGTG AGTGAAAATA AGGTACGTCG CATAGTTATC
GAAAATGACC TTACTAGTGC GGAACAGGTA ACAAATTACA TTAAAGCTGG TGGCGGTTGC
GGTTCCTGTT TAGCTAAAAT TGATGATATC ATTAAAGATG TAAAGGAAAA CAAAGCCGCA
ACAAACCTCA ACAATAAAGG CGGAAGTAAA CCTACAAATA TTCCTAATTC TGGGCAAAAA
CGACCCCTCA CCAACGTGCA GAAGATTGCC CTCATTCAAA AAGTATTAGA CGAAGAAGTA
AGACCCGTAT TGATTGCCGA CGGCGGAGAT GTAGAACTCT ACGATGTAGA CGGCGATATT
GTCAAAGTAG TACTGCAAGG CGCGTGTGGC TCCTGTTCTA GTAGTACAGC CACCTTGAAA
ATAGCGATTG AATCCAGATT ACGCGATCGC ATTAATCCCA GCCTAGTAGT AGAAGCAGTT
TAG
 
Protein sequence
MWDYTDKVLE LFYDPKNQGV IEDNGEPGVK VATGEVGSIA CGDALRLHIK VEVESDKIVD 
SRFQTFGCTS AIASSSALTE MIKGLTLDEA LKVSNKDIAD YLGGLPEAKM HCSVMGQEAL
EAAIYNYRGI PLATHDDEDE GALVCTCFGV SENKVRRIVI ENDLTSAEQV TNYIKAGGGC
GSCLAKIDDI IKDVKENKAA TNLNNKGGSK PTNIPNSGQK RPLTNVQKIA LIQKVLDEEV
RPVLIADGGD VELYDVDGDI VKVVLQGACG SCSSSTATLK IAIESRLRDR INPSLVVEAV