Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_3839 |
Symbol | |
ID | 3678732 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | - |
Start bp | 4778208 |
End bp | 4779527 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637719191 |
Product | secretion protein HlyD |
Protein accession | YP_324339 |
Protein GI | 75910043 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATCCT CTGAGCCTCA AACTGATTTT AGAGATAATC TTCCCCAGGA ACCCCCTGAG CCACCACCAA AACAAAGGCG GTGGCTCAGG TTATTGTTGG CTGCCATCCT ATTATTAGGG GGTGGAACAG CTATAGTTTG GCGGTTACTG ACTCCGAGCG ATCGCCCACC CGCCACGGCT GAGGCTCAAC CTCCAGGCGT AAGAGTAAAA ACATCACCAG TACAAGTCGG AACTATTGAA GAAAGCACAG ATTTTGTGGC TAGCTTAGAG TCTCGACGTT CCGTCACTCT CCAACCGAGA GTACAGGGTC AAGTGACCCA AATATTTGTG CGATCAGGAG ATGCGATCGC CTCTGGTGCA GCCGTAATTC AAATCGACCC CAGACAGCAG CAAGCAGCCG TCATCAGTAA CGATGCAGCA ACCCAAGCCA GCAAAGCACA ACTAGAAAAC GCTAATGCTA CCCTCAAATC CTTAGAAGCG GAAAGATTAT CTAATGTTGC TGATGTGCGA TTGAATCAGC AAGAGTACGA CAGGTATACA ACTTTAGCTG ACCAAGGCGC TGTATCTCGG CAAACTAAGG ATCAGTATGC CAACAGACTA GCTACAGCAC GAGCTAATCT CAACGCGATA GAATCTAGGA TTCAAGCCCA AAAAGCTAGC GTCGCCCAAG CACAAAAATC AGTGCAGCAA GCCCAGGCTA ACACTGACGA ACAACAAGTC CAACTCCAGT TCTATCGAAT TACCGCCCCC TTTGAAGGCA CTGTCGGCAA TATCCCTATT AAAATTGGTG ATTTTGTCAA TAGTTCCACA CCACTATTAA CCATTACTCA AAACCGACCC TTGGAGGTCA ATATCTCTGT ACCTCTAGAA CGAGGTTCCC AATTACGTCA GGGAATGCCA GTAGAGATTA TGAACACCCA AGGTCAAACA CTGGGTACTA GTAGGGTATT TTTCATTGCT CCTAATGCCA GTAATGAAAC CCAATCAATT CTGGTGAAAG CCTTATATAA CAACACAAAT GGTCAATTAA GGGCAGATCA GCTAGTGAGA GCTAGAGTGA TTTGGAATCA ACGCACAGGC GTTTTAATTC CGATTACAGC AGTCACACGC ATCGCCGGGG AAACTTTTGT CTATGTAACC CAAACGGAAA AAACACCCCA AGGAACCTCC CAACTAGTTG CACGGCAAAA ACGGGTGCAG TTGGGTGATA TCAGAGGTAA TAATTACCAA ATCATCAAGG GATTGCAGCC AACAGACACA ATTGTCACCT CAGGACTGCT GAATCTCCGT GATGGTGTTC CTATTGTTCC TGAATCTTAG
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Protein sequence | MSSSEPQTDF RDNLPQEPPE PPPKQRRWLR LLLAAILLLG GGTAIVWRLL TPSDRPPATA EAQPPGVRVK TSPVQVGTIE ESTDFVASLE SRRSVTLQPR VQGQVTQIFV RSGDAIASGA AVIQIDPRQQ QAAVISNDAA TQASKAQLEN ANATLKSLEA ERLSNVADVR LNQQEYDRYT TLADQGAVSR QTKDQYANRL ATARANLNAI ESRIQAQKAS VAQAQKSVQQ AQANTDEQQV QLQFYRITAP FEGTVGNIPI KIGDFVNSST PLLTITQNRP LEVNISVPLE RGSQLRQGMP VEIMNTQGQT LGTSRVFFIA PNASNETQSI LVKALYNNTN GQLRADQLVR ARVIWNQRTG VLIPITAVTR IAGETFVYVT QTEKTPQGTS QLVARQKRVQ LGDIRGNNYQ IIKGLQPTDT IVTSGLLNLR DGVPIVPES
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