Gene Ava_3839 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_3839 
Symbol 
ID3678732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp4778208 
End bp4779527 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content47% 
IMG OID637719191 
Productsecretion protein HlyD 
Protein accessionYP_324339 
Protein GI75910043 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones43 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCCT CTGAGCCTCA AACTGATTTT AGAGATAATC TTCCCCAGGA ACCCCCTGAG 
CCACCACCAA AACAAAGGCG GTGGCTCAGG TTATTGTTGG CTGCCATCCT ATTATTAGGG
GGTGGAACAG CTATAGTTTG GCGGTTACTG ACTCCGAGCG ATCGCCCACC CGCCACGGCT
GAGGCTCAAC CTCCAGGCGT AAGAGTAAAA ACATCACCAG TACAAGTCGG AACTATTGAA
GAAAGCACAG ATTTTGTGGC TAGCTTAGAG TCTCGACGTT CCGTCACTCT CCAACCGAGA
GTACAGGGTC AAGTGACCCA AATATTTGTG CGATCAGGAG ATGCGATCGC CTCTGGTGCA
GCCGTAATTC AAATCGACCC CAGACAGCAG CAAGCAGCCG TCATCAGTAA CGATGCAGCA
ACCCAAGCCA GCAAAGCACA ACTAGAAAAC GCTAATGCTA CCCTCAAATC CTTAGAAGCG
GAAAGATTAT CTAATGTTGC TGATGTGCGA TTGAATCAGC AAGAGTACGA CAGGTATACA
ACTTTAGCTG ACCAAGGCGC TGTATCTCGG CAAACTAAGG ATCAGTATGC CAACAGACTA
GCTACAGCAC GAGCTAATCT CAACGCGATA GAATCTAGGA TTCAAGCCCA AAAAGCTAGC
GTCGCCCAAG CACAAAAATC AGTGCAGCAA GCCCAGGCTA ACACTGACGA ACAACAAGTC
CAACTCCAGT TCTATCGAAT TACCGCCCCC TTTGAAGGCA CTGTCGGCAA TATCCCTATT
AAAATTGGTG ATTTTGTCAA TAGTTCCACA CCACTATTAA CCATTACTCA AAACCGACCC
TTGGAGGTCA ATATCTCTGT ACCTCTAGAA CGAGGTTCCC AATTACGTCA GGGAATGCCA
GTAGAGATTA TGAACACCCA AGGTCAAACA CTGGGTACTA GTAGGGTATT TTTCATTGCT
CCTAATGCCA GTAATGAAAC CCAATCAATT CTGGTGAAAG CCTTATATAA CAACACAAAT
GGTCAATTAA GGGCAGATCA GCTAGTGAGA GCTAGAGTGA TTTGGAATCA ACGCACAGGC
GTTTTAATTC CGATTACAGC AGTCACACGC ATCGCCGGGG AAACTTTTGT CTATGTAACC
CAAACGGAAA AAACACCCCA AGGAACCTCC CAACTAGTTG CACGGCAAAA ACGGGTGCAG
TTGGGTGATA TCAGAGGTAA TAATTACCAA ATCATCAAGG GATTGCAGCC AACAGACACA
ATTGTCACCT CAGGACTGCT GAATCTCCGT GATGGTGTTC CTATTGTTCC TGAATCTTAG
 
Protein sequence
MSSSEPQTDF RDNLPQEPPE PPPKQRRWLR LLLAAILLLG GGTAIVWRLL TPSDRPPATA 
EAQPPGVRVK TSPVQVGTIE ESTDFVASLE SRRSVTLQPR VQGQVTQIFV RSGDAIASGA
AVIQIDPRQQ QAAVISNDAA TQASKAQLEN ANATLKSLEA ERLSNVADVR LNQQEYDRYT
TLADQGAVSR QTKDQYANRL ATARANLNAI ESRIQAQKAS VAQAQKSVQQ AQANTDEQQV
QLQFYRITAP FEGTVGNIPI KIGDFVNSST PLLTITQNRP LEVNISVPLE RGSQLRQGMP
VEIMNTQGQT LGTSRVFFIA PNASNETQSI LVKALYNNTN GQLRADQLVR ARVIWNQRTG
VLIPITAVTR IAGETFVYVT QTEKTPQGTS QLVARQKRVQ LGDIRGNNYQ IIKGLQPTDT
IVTSGLLNLR DGVPIVPES