Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_3660 |
Symbol | |
ID | 3679216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 4566866 |
End bp | 4568161 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637719011 |
Product | pilus retraction protein PilT |
Protein accession | YP_324161 |
Protein GI | 75909865 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGAAT CCCAGTCCCC ATCAACTTCC CATCCCGTTG CTTCACGTAA TATACAGCCT GTACCACCGC CACCATTACC ACCGCCACCA TCGTTAATTA CCCAAAGGCA GCATACACAA ACCTTGGATA TGTCATCAGT TAATAGGAGT GCAAACCAAC CTTCACCACC TCCACCACCT AGTGCGGCTC ATCGTCCTGG GACACCGCCA TCGGTTTCAA ACCCATCTAA TGATTCGCCT TTAACTTTGG CACAGATTAT TAGAGAAGCT TTTGATAATG GCTATTCTGA TATTCACTTG GGTGTCGGTG AAGTTCCCCG CTACCGCAAC CGAGGTGAAA TTAACCCAAC TGACTATCCC GAAACCGATA AAGCAACTTT TATGAGTTGG TTACGGGAAA TCATGACTGA GCCAGAAATT CAACGCTTCC AAGAGCATTT GGAATTTGAT GGTGCAACTC AGTACGAATT TGCCCGTGTA CGGATTAATG TCTTTGATTC TCTCAAAGGC TATTCGATGG TTTTGCGGTT GATTCCATTG AAGATACTCT CTATTGACCA GTTGAGATTA CCACCAGTAT TTCGGGATGT TTGTCACACT CACAAAGGTT TAATTTTGGT GACAGGCCCT ACTGGTTCTG GTAAATCTAC AACAATGGCG GCAATGATTG ATTACATCAA TCGAGAAATG CCTAAGCACA TCATTACTAT TGAAGACCCT GTAGAATTCG TTCACCAAAG CCGTAAGTCT TTGATTAAGC AACGGGAAGT GGGAATGCAC ACCCGTAAAT TTGATAATGC TTTAAAAGCG GCTTTGCGGG AAGACCCAGA CTTGATTCTG GTGGGGGAAA TGCGGGATAA AGAAACCGTC AATACAGCAC TGAAAGCGGC TCAAACTGGT CACTTGGTAA TGGGAACCCT ACACACCAAT AGTGCAGTGA AAACTATTGA ACGGATTCTT AATTTATATT CAGGTGAAGA ACAGGATGCT ATGCGAATAG CCATAGCAGA GTCTTTGGTA GCGGTGATTG CTCAAGGGTT GTGTCGCACA ACTGATGGTA AGCGGGCAGC TTTCCACGAT ATTTTGATTA ATACTGAAGC AATCAAGGAA TGGATTAAGG ATGGTAAATA TGATGAAATT AGCGAACTGA TGAAGCAAGC TAGTTTTGAC GGGATGGTGA CGATGAATCA ATCTTTGCTC AATCTCTATC AAGAAGGCCG CATCACTGAA GAAACTGCGC TGGAAATGTC ACCAACTCCT AACGAAATGG CTCAGTTCCT TCGAGGACGA GTTTAG
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Protein sequence | MTESQSPSTS HPVASRNIQP VPPPPLPPPP SLITQRQHTQ TLDMSSVNRS ANQPSPPPPP SAAHRPGTPP SVSNPSNDSP LTLAQIIREA FDNGYSDIHL GVGEVPRYRN RGEINPTDYP ETDKATFMSW LREIMTEPEI QRFQEHLEFD GATQYEFARV RINVFDSLKG YSMVLRLIPL KILSIDQLRL PPVFRDVCHT HKGLILVTGP TGSGKSTTMA AMIDYINREM PKHIITIEDP VEFVHQSRKS LIKQREVGMH TRKFDNALKA ALREDPDLIL VGEMRDKETV NTALKAAQTG HLVMGTLHTN SAVKTIERIL NLYSGEEQDA MRIAIAESLV AVIAQGLCRT TDGKRAAFHD ILINTEAIKE WIKDGKYDEI SELMKQASFD GMVTMNQSLL NLYQEGRITE ETALEMSPTP NEMAQFLRGR V
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