Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_3586 |
Symbol | |
ID | 3679356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 4467191 |
End bp | 4468615 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637718937 |
Product | secretion protein HlyD |
Protein accession | YP_324087 |
Protein GI | 75909791 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR02971] ABC exporter membrane fusion protein, DevB family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.659041 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0297067 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCAAGGG TGACGGAAGA ACGTAGGTCA AGAGAGCAGC CACTTGATCT AGAACAACCT AAGATTTGGT GGGGTCTTGC TGTAGCCCTA CCAGTAGCCG TGGCTGCGGG GTTACTAGCT ACAGCTAAAT TTGAGCAATT AAAAAGGCTA GGCCCATCCG TACCTGTTAA ACCAGTCGTT ACAAGTGTTA GTGCTGTGGG ACGTTTAGAA CCGCAAGGGG AAGTAATTAA ACTTTCGGCT CCCGTGGGAG GAATGCAATC CGCATCACGA GTTAAACAAC TTTTTGTAAA AGAGGGAGAA CGTGTTAGGA AGGGTCAAAT CATAGCAATT TTGGATAATC ACGATACCCA ACTAGCGGCC GTGGAAGAAG CGAAAGCCAA ATTACTGGAA TCTCGCGCTA ACTTGGCTCA AGTCCGGGTT GGTTCCCCCA GGGATATCCA AGCGCAAACC GCCGTAATTG CTCGCTTACA GGCGCAGTTA GTTGGTGAAA GGGATGCTCA ACAAGCAACT ATTACGCGTA TCGCATCCCA ATTGAGTGCG GAAAAAGTAG CGCAACAAGC ATTAGTTAAC CGCTTAGAAG CAGAACTCTT AGGACAGCAA GACAGTTTAA GAGCCACTCT GAACCGCATT AGAGCCGAGC AACGTAACGC TCAAGTGGAT GCGGGGCGCT ACGATTTTCT CTACCGGGAA GGTGCTATTT CCCAGCAAGA GCGAGATAGA AGGCGATTAA CGGCGACTAC TGCTAATCAA CAGGTAATTG AAAGTCAAGC CACCTTGAGA CAGGCGCTAG CCACTCTCAG ACAGCAAGTT GCTGAGGCTA GAGCTAATCA GATGAAAACT CTAGCCAGTT TGCAACAGCA ACTCATCGAA GCGAGAGTTA CCCGTGACAA AACCGTAGCG ACATTACAAA GACAAATTGA CGAAGAAAAA GCCAGGCTGA AAAGATTGGT GGAAGTTAGT CCTACTGATG TGCAGATGGC TCAAGCTCAA GTTAGTAATG CGATCGCCAA CGTCAGAAAA GCCGAAGCCG AATTAAAATT AAGCTACATT CAAGCACCCT CGGCGGGAGA AATCTTAAAA ATTTATAGCA AGTCGGGAGA AGCCATCACC GCCGACGGTA TCGCCGAAAT GGGAGAAACC GAGCAAATGA TGATTATTGC TGAGGTTCCT GAAGACAGTA TTGGTCGGGT ACGCATAGGC CAAAATGTCA CAGCCAGCAG CGATAACGGA GCCTTTAGCG GGGAAATCAG AGGAACAGTC ACCGAAATTG GCAGAAAAAT TGGCAAAAAA GATGTCTTAA ATACAGATCC AGCAGCTGAT GTTGATGCCA GAGTTGTTGA AGTCAAAATT GCCTTATCAC CGGAAGACAG CCAAAAAGTC TCTGGTTTAA CCTACGCCAA GGTAGTGGTT GACATTAATA AATAA
|
Protein sequence | MSRVTEERRS REQPLDLEQP KIWWGLAVAL PVAVAAGLLA TAKFEQLKRL GPSVPVKPVV TSVSAVGRLE PQGEVIKLSA PVGGMQSASR VKQLFVKEGE RVRKGQIIAI LDNHDTQLAA VEEAKAKLLE SRANLAQVRV GSPRDIQAQT AVIARLQAQL VGERDAQQAT ITRIASQLSA EKVAQQALVN RLEAELLGQQ DSLRATLNRI RAEQRNAQVD AGRYDFLYRE GAISQQERDR RRLTATTANQ QVIESQATLR QALATLRQQV AEARANQMKT LASLQQQLIE ARVTRDKTVA TLQRQIDEEK ARLKRLVEVS PTDVQMAQAQ VSNAIANVRK AEAELKLSYI QAPSAGEILK IYSKSGEAIT ADGIAEMGET EQMMIIAEVP EDSIGRVRIG QNVTASSDNG AFSGEIRGTV TEIGRKIGKK DVLNTDPAAD VDARVVEVKI ALSPEDSQKV SGLTYAKVVV DINK
|
| |