| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3423 |
|---|
| Symbol | |
|---|
| ID | 3679949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 4254242 |
|---|
| End bp | 4256257 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637718775 |
|---|
| Product | arginine decarboxylase |
|---|
| Protein accession | YP_323925 |
|---|
| Protein GI | 75909629 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
|---|
| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGTTG AGTCAACTGC TACATCTGAC GAGGTGGTAA AAGTACCAGC CAACGGGAAC
AAGTTGGAGG GGAAAAATCA CAAGCAGAAA AAGCTGCTAC CAACGAATGC GCCAGGAGAT
GTATCTCGCG CTTGGAAGAT TGAGGACAGC GAAGCTTTAT ACCGGATTGA AGGTTGGGGA
CAGCCTTATT TCTCGATTAA TGCGGCTGGT CACGTTACTG TTTCTCCCAA AGGCGATCGC
GGCGGTTCTT TGGACTTGTT TGAATTGGTC AATGCTTTGA AACAACGCAG TTTGGGTTTA
CCCTTACTGA TTCGCTTTTC GGATATTTTA GAAGACCGCA TTGAACGCTT AAACGCTTGT
TTTGCCAAGG CGATCGCTCG CTACAATTAC CCTGGTGTAT ATCGTGGCGT GTTTCCTGTC
AAGTGCAACC AGCAACGGCA TTTGATTGAA GATTTAGTGA GATTTGGCAA GCCACATCAG
TTTGGTTTAG AAGCTGGTTC CAAGCCGGAG TTAATGATTG CTTTGGCGTT ATTGGATACC
CCTGGATCTT TGCTAGTTTG CAACGGCTAC AAAGACCGGG AGTATGTGGA AACGGCCATG
TTATCCCAAA GACTAGGCCA AACACCAATC ATCGTCCTAG AACAGGTGGA AGAGGTCGAT
TTAGTGATTG CGGCTAGTCA CCAATTAGGC ATTAAGCCGA TTTTGGGGGT ACGGGCAAAA
TTAAGCACCC AAGGGATGGG ACGCTGGGGT ACATCCACAG GCGATCGCGC TAAATTTGGC
CTGACAATTC CCGAAATCAT CCAAGCAGTT GATAAGTTAC GTGATGCTGA CTTGCTGGAT
TCTTTGCAAT TAATGCACTT CCATATTGGT TCGCAAATCT CCGCCATCAA TGTCATTAAA
GATGCCATCC AAGAAGCTAG CCGGATTTAC GTGGAGTTAG CATCCTTGGG GGCTAATATG
AAATATCTGG ATGTTGGCGG CGGCTTGGGT GTGGATTATG ACGGTTCCCA GACGAACTTC
TACGCCTCCA AGAACTACAA TATGCAGAAC TATGCCAACG ACATCGTGGC AGAGTTAAAA
GATACCTGTG CAGAGAAACA AATTCCCGTA CCCACACTGA TTAGTGAAAG CGGTAGAGCG
ATCGCCTCCC ATCAATCGGT ACTCATTTTC GATGTTCTCA GTACCAGTGA TGTCCCCCGC
GATAACCCAG AACCACCAAA AGAAGGTGAA TCCCCAGTTA TTAATTACCT GTGGGAAACC
TATCAATCCA TCAACAAAGA AAACTATCAA GAGTTCTACC ACGACGCTAC CCAATTCAAG
GAAGAAGCCA TTAGCCGCTT CAACTTGGGC ATTTTACGCC TGCGTGAACG AGCCAAAGCT
GAACGTCTTT ACTGGGCTTG TTGTCAGAAA ATTTTAGACA TTATTCGTCA GCACGATTAC
GTACCTGATG AGTTGGAAGA CCTAGAAAAA ATCATGGCTT CTATCTACTA CATCAATCTT
TCGGTGTTTC AATCAGCACC AGATTGCTGG GCGATCGATC AACTGTTCCC AATTATGCCC
ATCCATCGCC TAGATGAAGA ACCAACGCAG CGAGGAATTT TAGCAGACCT CACCTGCGAT
AGTGATGGCA AAATTGATCG CTTTATCGAC TTACGGGATG TCAAATCTGT GCTAGAACTG
CACCCCTTCC AACCGGGAGA ACCCTATTAT ATGGGAATGT TCCTCAATGG TGCTTATCAG
GAAATTATGG GGAACTTACA CAACTTATTC GGCGATACCA ACGCCGTTCA TATCCAATTA
ACACCCAAAG GCTACCAAAT TGAACACGTA GTCAAAGGCG ATACCATGAG TGAAGTGGTG
AGCTACGTCC AATATGACTC CGAGGACATG GTAGAAAACA TCCGCCAACG TTGCGAGCGG
GCGTTAGAAG AAAAACGCAT TACCTTAGCC GAATCCCAAC GCTTACTCCA GACTTACGAA
CAAAGTCTCA GAAGATACAC ATACTTAAAT AGTTAG
|
|---|
| Protein sequence | MGVESTATSD EVVKVPANGN KLEGKNHKQK KLLPTNAPGD VSRAWKIEDS EALYRIEGWG
QPYFSINAAG HVTVSPKGDR GGSLDLFELV NALKQRSLGL PLLIRFSDIL EDRIERLNAC
FAKAIARYNY PGVYRGVFPV KCNQQRHLIE DLVRFGKPHQ FGLEAGSKPE LMIALALLDT
PGSLLVCNGY KDREYVETAM LSQRLGQTPI IVLEQVEEVD LVIAASHQLG IKPILGVRAK
LSTQGMGRWG TSTGDRAKFG LTIPEIIQAV DKLRDADLLD SLQLMHFHIG SQISAINVIK
DAIQEASRIY VELASLGANM KYLDVGGGLG VDYDGSQTNF YASKNYNMQN YANDIVAELK
DTCAEKQIPV PTLISESGRA IASHQSVLIF DVLSTSDVPR DNPEPPKEGE SPVINYLWET
YQSINKENYQ EFYHDATQFK EEAISRFNLG ILRLRERAKA ERLYWACCQK ILDIIRQHDY
VPDELEDLEK IMASIYYINL SVFQSAPDCW AIDQLFPIMP IHRLDEEPTQ RGILADLTCD
SDGKIDRFID LRDVKSVLEL HPFQPGEPYY MGMFLNGAYQ EIMGNLHNLF GDTNAVHIQL
TPKGYQIEHV VKGDTMSEVV SYVQYDSEDM VENIRQRCER ALEEKRITLA ESQRLLQTYE
QSLRRYTYLN S
|
|---|
| |