Gene Ava_3295 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_3295 
Symbol 
ID3680287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp4110711 
End bp4111646 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content40% 
IMG OID637718646 
ProductTPR repeat-containing protein 
Protein accessionYP_323798 
Protein GI75909502 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGATTAC CATTCTATAA ATATCGCATA GTAGCGTTGC TGAGTTTGAT ATTACTAGGT 
GAATGCTTGA CACCAGCCAA CGCAACTATC CCCGCCATCC CCAAACTATT AGCACAATAT
AGTCTTCCTA CAGCCCCAAC CTTATTAAAT CAGGGATTAC AGGCAATTCA AGCTGGGAGA
ATCCAAGATG CGATCGCCGC TTTTCAATCA GCCATTCAGT TAGATCCTAA CCTAGCCGCA
GCTCACTACA ATCTGGGTTT AGCCCTGCGA CAAACCGGAC AATTACAGCC AGCCGCCGAC
GCATTTTATC GCGCTACTCA AAGTGACCCC AATTTTGCTT TAGCCTTTGC TAATTTAGGC
GGCTCATTAT TAGAAGGTAA TAATTTACAA CAAGCAAACG ACTATTTGCA ACGTGCATTG
GAATTAGAAC CCAGGCTGGG TTTTGCACAT TATAACTTGG GTTTGGTGAG GCAGCAGCAA
CAAAATTGGG AAGGAGCGAT CGCCTCATTT CAAAAAGCAG TAGAATTGAG TAAAAATGCA
CCTGAGCCTC ATTATTATCT AGGACTTTGT TATTTACAAT TAGGTAAATT AGATGAGGCA
AAAAATGCTT TTAATCAAGC TATAAAAATC AACCCACGAT ACTCCGAAGC TCATTATAAT
TTGGGCGTTA TCTTATTTAA TCAAGGCAAC TCCCAAGAAG CATTAATAGC CTTTAGAAAT
TCGGCCGAAG CTAATCCTAA TTATCCCAAT GCTTATTACG GTGCAGGATT AGTTTTCACC
CAATTAAATC AATATAGTGA AGCGGCGAAA GTATTTAATC ACGCCAGGAA TTTATATAAT
ACCCAAGGTA ATCCTCAATG GGCAAAAAAT TCTGAACAAT TGTTACAACA AGTACAAAAT
TTAAATTCCG TACCACGCGG AGGTAATAAT AATTAA
 
Protein sequence
MRLPFYKYRI VALLSLILLG ECLTPANATI PAIPKLLAQY SLPTAPTLLN QGLQAIQAGR 
IQDAIAAFQS AIQLDPNLAA AHYNLGLALR QTGQLQPAAD AFYRATQSDP NFALAFANLG
GSLLEGNNLQ QANDYLQRAL ELEPRLGFAH YNLGLVRQQQ QNWEGAIASF QKAVELSKNA
PEPHYYLGLC YLQLGKLDEA KNAFNQAIKI NPRYSEAHYN LGVILFNQGN SQEALIAFRN
SAEANPNYPN AYYGAGLVFT QLNQYSEAAK VFNHARNLYN TQGNPQWAKN SEQLLQQVQN
LNSVPRGGNN N