Gene Ava_3192 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_3192 
Symbol 
ID3680671 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp3966194 
End bp3967111 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content43% 
IMG OID637718542 
Producthistone deacetylase superfamily protein 
Protein accessionYP_323695 
Protein GI75909399 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00911775 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000717233 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAATTGC CAATTATTTA TCACCCACAT TATGTTGCAC CATTGCCTGA AGGACATCGC 
TTCCCGATGG CAAAATTCAA AAAACTCTAT GAATTGCTCT TAAGTGATGA TGTAGCACAA
ACAGAGCAAT TTTATACCCC AATCCTGCCA CACCCAGAGT TAATCGAGTT AGTTCATACC
CCAGACTATG TGCGGTCTTA CTGCGAAGGT ACACTAGATA CTAAAGCACA ACGTCGAATC
GGTTTACCTT GGAGTCCAGC ACTAGCAAAT CGTACCTGTA TAGCTGTGGG TGGAACAATA
CTCACAGCAC AGCTAGCACT CAATCAAGGT TTAGCTTGTA ATACTGCTGG TGGTACTCAT
CATGCTTTTC CTAGTTATGG TTCTGGTTTT TGTATTTTCA ACGATATAGC GATCGCCTCT
CGCGTTCTCC AACAACAGCA ACTAGTCAAA AAAATCCTCA TTGTCGATTT GGATGTCCAT
CAAGGAGACG GTACAGCGTT TATATTCCAA GATGATGACA GTGTTTTCAC ATTCTCCATG
CACTGCGAAG TTAATTTCCC AGGAACCAAG CAACACAGTG ATTTAGATGT TCCCTTACCA
GTAGGAATGG AGGATGATGC TTACCTACAA ACCTTGGCGA GTTACCTACC AGATTTGTTA
TCTGAGATCA AACCAGACTT AGTATTTTAC GATGCTGGTG TTGATCCCCA CATAGGCGAT
CGCTTAGGTA AACTAGCCTT AAGTGACACT GGCTTATTCC GTCGAGAAAT GCAGGTTTTA
ACTACCTGTA TCAGCGCTGG TTATCCAGTC GCCTGCGTAA TTGGTGGTGG TTACGCTGAT
GATATGACAT CCCTAGTTTG GCGACATTCC CTATTGCATC GTGCCGCTAG TGAGGTTTAC
CGTCAATACA AGCTTTAA
 
Protein sequence
MELPIIYHPH YVAPLPEGHR FPMAKFKKLY ELLLSDDVAQ TEQFYTPILP HPELIELVHT 
PDYVRSYCEG TLDTKAQRRI GLPWSPALAN RTCIAVGGTI LTAQLALNQG LACNTAGGTH
HAFPSYGSGF CIFNDIAIAS RVLQQQQLVK KILIVDLDVH QGDGTAFIFQ DDDSVFTFSM
HCEVNFPGTK QHSDLDVPLP VGMEDDAYLQ TLASYLPDLL SEIKPDLVFY DAGVDPHIGD
RLGKLALSDT GLFRREMQVL TTCISAGYPV ACVIGGGYAD DMTSLVWRHS LLHRAASEVY
RQYKL