Gene Ava_3176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_3176 
Symbol 
ID3680654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp3943406 
End bp3944704 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content49% 
IMG OID637718525 
Productbranched-chain alpha-keto acid dehydrogenase subunit E2 
Protein accessionYP_323679 
Protein GI75909383 
COG category[C] Energy production and conversion 
COG ID[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 
TIGRFAM ID[TIGR01349] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.105632 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATTC ACGAAATCTT CATGCCGGCG CTGAGTTCCA CCATGACCGA AGGCAAAATT 
GTCTCCTGGG TGAAATCGCC AGGCGATAAA GTGGAAAAAG GCGAAACAGT GGTGGTTGTC
GAGTCAGACA AAGCAGATAT GGATGTAGAA ACCTTCTACG AAGGGTATCT CGCTCACATC
ATTGTAGAAG CTGGTGATAG CGCACCTGTA GGAGCAGCGA TCGCTTACGT AGCCGAAACC
GAAGCGGAAA TCGAGGCCGC CAAGTCTTTA GGCAGTTCTG GTGGCGCTGC GGCCACTCCT
AGCGCCCCTC CTGAACCAGT CGCAGCCACC GCCGCCGTAG GTGTACCAGC CGCATCACAA
AATGGCTCTA ACCACCGTGA AGGAAGGCTT GTAGCTTCAC CCCGCGCCCG CAAGTTGGCA
AAAGAACTGA AAGTTGATTT GACCAGTCTC AAAGGTAGTG GCCCCTATGG TCGCATTGTG
GCCGATGACA TAGAAGCTGC TGTTGGTAAA GTCAAGCAAC CAGCCACTAC ACCGACTGCA
CCCACACCCA CCTTTACCCC AGCCCCAGTC CCAGCAACCA GGACTCCAGC ACCAGCACCA
GCACCAGCAC CAGTAGCGGC CGCACCTGGG CAAGTAGTAC CATTTAATAC CCTACAAAAC
GCTGTCATTC GTAACATGGT GGCGAGTCTA GATGTACCCG TGTTCCGTGT GGGTTACACC
ATCACCACCG ATGGCTTAGA CAAACTTTAC AAACAAATTA AATCCAAAGG TGTAACCATG
ACAGCGCTAC TGGCGAAAGC TGTAGCGGTG ACATTACAAA AACACCCTTT ATTAAATGCC
AGCTATTCAG ATCAAGGTCT TGTTTACCAT CCTGACATCA ATATTGCGGT AGCTGTAGCG
ATGGATGGTG GCGGTTTAAT TACACCAGTA TTAAAAAATG CCGACAAGAT AGATATTTAC
TCTCTATCAC GCACCTGGAA ATCTCTAGTA GACAAGGCCA GAAGCAAACA ACTACAACCA
GATGAATACA GTGGTGGTAA CTTTACCCTA TCAAACTTGG GGATGTTTGG TGTAGATACA
TTTGATGCCA TTTTACCCCC AGGACAAGGT TCAATTTTAG CGATCGGCGC ATCTCGTCCC
CAATTGGTAG CCACAGGCGA TGGTTCATTT GCTATCAAAC AACAAATGCA GGTAAATATT
ACATCTGATC ACCGGATTAT TTACGGTGCT GATGCTGCCG CATTTTTACA AGATTTAGCC
AAGTTAATTG AAACTGACGC TCAATCTTTG ACACTGTAA
 
Protein sequence
MSIHEIFMPA LSSTMTEGKI VSWVKSPGDK VEKGETVVVV ESDKADMDVE TFYEGYLAHI 
IVEAGDSAPV GAAIAYVAET EAEIEAAKSL GSSGGAAATP SAPPEPVAAT AAVGVPAASQ
NGSNHREGRL VASPRARKLA KELKVDLTSL KGSGPYGRIV ADDIEAAVGK VKQPATTPTA
PTPTFTPAPV PATRTPAPAP APAPVAAAPG QVVPFNTLQN AVIRNMVASL DVPVFRVGYT
ITTDGLDKLY KQIKSKGVTM TALLAKAVAV TLQKHPLLNA SYSDQGLVYH PDINIAVAVA
MDGGGLITPV LKNADKIDIY SLSRTWKSLV DKARSKQLQP DEYSGGNFTL SNLGMFGVDT
FDAILPPGQG SILAIGASRP QLVATGDGSF AIKQQMQVNI TSDHRIIYGA DAAAFLQDLA
KLIETDAQSL TL