| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3096 |
|---|
| Symbol | |
|---|
| ID | 3681018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 3850251 |
|---|
| End bp | 3851186 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637718441 |
|---|
| Product | tyrosine recombinase XerD subunit |
|---|
| Protein accession | YP_323600 |
|---|
| Protein GI | 75909304 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00033868 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.385268 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCA CTCTCACCAT CCATGAACCA CAGGTAGTTA TACCTAATAG CCTACCTATA
ACCTACAGTG AAGACACTAC CACAACAGAA CGAGTCATAG AGTTGTGGTT GGTTGGGTTA
AGTCGAACGA CACGAGAACA ATACAGCCGT GACATGAGGC AGTTTAGAGC GTTCGTCAAG
TTGGACGACA TTCGTATCAT CTCACCGATG ACGTTCATCG CCTACGCCCA ACACCTAGAA
CAGACGTATG CTGTTGCCAC TACTCGACGT AAGTTAGCAT CGTTGTCTAG TTTCTGTTCG
TTCGCTGTCC GTCTGGGGTT TCTGGCTGCA AACCCAATGG CTGCTGTCCG TAAGCCAAAA
GCATCGACCA CATTAGCGGG TAAGTCTTTA ACACAACAAC AGGTGTTCAG GATGCTAGAT
AGAACAGATG ACCACCGCAA CAGGTGTTTG TTAAAGGTGT TGTACAGTCT GGGGTTGCGT
GTAAGTGAAG CTGTTGGTTT ACGTTGGTCA GACTTTACTG AGGTCAACCC CACCAAGACA
ACCGTCAGTG TATTGGGTAA AGGTGGTAAA TATCGAACGC TGGTTGTACC TCAGTCAGTT
TGGTTGGAGT TAACCGAGTT GCGAACAAAC CAACAGCACA ACGGACAGAA TGACTACGTG
TTTCAGTCAT ATAGCAACCG TCATCGTAAG CAGTCAGGTA AACAACTCGA CCGTTGCAAC
GCATCCAAGA TAGTTAAAGC CTGTGCCGTT GCTGTTGGGT TGCCTGAGTC AGTGTCGGCT
CACTTCCTAC GTCATGCCTG TGCGTCCCAC AGTTTAGCCA ACGGTGCATC TATCCAACTG
GTAAAGGAAA CGTTGGGTCA TGCCAATATC TCTACAACAA ACTGGTATTT GGAAGCTAAC
CCAGATGACT GTGCCTCACT GTACCTTAAC GTTTAA
|
|---|
| Protein sequence | MTTTLTIHEP QVVIPNSLPI TYSEDTTTTE RVIELWLVGL SRTTREQYSR DMRQFRAFVK
LDDIRIISPM TFIAYAQHLE QTYAVATTRR KLASLSSFCS FAVRLGFLAA NPMAAVRKPK
ASTTLAGKSL TQQQVFRMLD RTDDHRNRCL LKVLYSLGLR VSEAVGLRWS DFTEVNPTKT
TVSVLGKGGK YRTLVVPQSV WLELTELRTN QQHNGQNDYV FQSYSNRHRK QSGKQLDRCN
ASKIVKACAV AVGLPESVSA HFLRHACASH SLANGASIQL VKETLGHANI STTNWYLEAN
PDDCASLYLN V
|
|---|
| |