| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3088 |
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| Symbol | dapF |
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| ID | 3681010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 3838451 |
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| End bp | 3839299 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637718433 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_323592 |
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| Protein GI | 75909296 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.233699 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGAAAAA TGGCAATCGA ATTTACTAAG TATCACGGTC TAGGCAACGA TTTTATTCTC
ATCGATAATC GCGCTTCTAA AACGCCGGCA ATCACTCCAG AGAAAGCGGT GGAGATGTGC
GATCGCCACT TTGGTATCGG TGCTGATGGT GTAATTTTTG CCTTACCTGG AGAAAACGGT
ACTGATTACA CCATGCGGAT TTTTAATTCC GATGGTTCAG AACCGGAAAT GTGTGGTAAT
GGTATTCGCT GTCTCGCTGC ATTTCTGGCT GATTTGGAAG GGCTTTCTCG TAATAAGGAT
ACCTATCGTA TTCATACTTT AGCTGGTGTG ATTACCCCCC AACTCACCCC TGATGGACAA
ATCAAGGTGG ATATGGGTTT ACCTCGGTTA CTAGCTGGGG AAATTCCGAC AAATATTGCT
GCTGCTGATC AGAAAGTAAT TAACCAACCC CTAGAAGTAG AAGGGAAAAC TTGGGAAGTT
ACTTGTGTCA GCATGGGGAA TCCCCACTGT ATTACTTTCG TGGAAGACGT GGCAGCGATT
CCTTTAGAAA CCATCGGCCC TAAATTTGAA CATCACCCAG CTTTTCCTCA ACGGACAAAC
ACCGAATTTA TTCAAGTTGT CAGCCGTGAT TACTTGAAGA TGCGTGTCTG GGAACGCGGT
GCAGGAATTA CTTTAGCTTG TGGTACAGGT GCTTGTGCTT CCTTGGTAGC GGCGGTATTG
ACTGGAAGAA GCGATCGCCT CGCTACTGTA GAATTGCCTG GTGGCCCTTT GGAAATTGAA
TGGTCAGAAG TAGACCAAAG AATTTATATG ACCGGCCCAG CTGATAGGGT ATTCACAGGT
AAACTGTGA
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| Protein sequence | MGKMAIEFTK YHGLGNDFIL IDNRASKTPA ITPEKAVEMC DRHFGIGADG VIFALPGENG
TDYTMRIFNS DGSEPEMCGN GIRCLAAFLA DLEGLSRNKD TYRIHTLAGV ITPQLTPDGQ
IKVDMGLPRL LAGEIPTNIA AADQKVINQP LEVEGKTWEV TCVSMGNPHC ITFVEDVAAI
PLETIGPKFE HHPAFPQRTN TEFIQVVSRD YLKMRVWERG AGITLACGTG ACASLVAAVL
TGRSDRLATV ELPGGPLEIE WSEVDQRIYM TGPADRVFTG KL
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