Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_2856 |
Symbol | |
ID | 3681459 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | - |
Start bp | 3547598 |
End bp | 3548491 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637718203 |
Product | TPR repeat-containing protein |
Protein accession | YP_323364 |
Protein GI | 75909068 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCAAG AGGGCGGTAG TGTGCCTAAA CACGTTAGTT TGATTTCTCT TCTGGTTGTC TGTGGTTTGT GGAGTATGCC CCAAGCAGCT CATGCACAGG CGTTGATACC TCATACATTG CAACTAGATC CAGCAAAGTT GGAAAAGCAA GGGTTGAGTT TAGCCCAAGA AGCGGCTCAA CTGGGGCAGT TCCAGCAGTA TGAATTGGCT TTAGCAAGAG CAAAATTGGC CAGCCAGTTA GCTCCTGGGA ATGATAAAGT GTGGTTTCTC TTGGGTGGTT TGCAGTTGCA AACTAAAAAT TTTGATGGAG CGATCGCATC TCTCAATAGA TCAAAAACAA TCAATCCCAA GAATGCTGAT GTCTTGTTTG CTTTAGGCTC GGCTAATTTT CAACAAAAAA AATATCAAGT AGCTATTGAA CATTACCAAG CTGGTTTGGC ATTGAAACCC AACGAAGCAG ATGGATTGTT TGATTTAGGA AACGCCTATT ACATGATAGG ACGATTGCCA GATGCGATCG CTCAATACAA TAAAGCTGTA GCCCAAGATA AAAAATTCTG GCCAGCAATT AACAATATTG GCTTAATCAG CTACGAACAA GGTAACGTGG ACGAAGCCAT TAAGCGATGG CAATCTGCTG TTGCCATTGA TAAACAAGCC GCAGAACCAT TGCTAGCTCT AGCAGTGGCT CTGTATACCA AAGGCGATCG CCAACAGGGT ATATCTTTAG GAGAAGCCGC ACTCCGGATT GATCCGCGCT ATGCCAGCAT AGATTTTCTC AAAGAAAATT TGTGGGGCGA TCGCTTATTG TCTGATACAA AACAATTCTT GGAATTACCG CGCATCCAAG CAGCTTTAGG ACAGCGAGAA AGCGCACCTA CTCCTAGACA GTGA
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Protein sequence | MAQEGGSVPK HVSLISLLVV CGLWSMPQAA HAQALIPHTL QLDPAKLEKQ GLSLAQEAAQ LGQFQQYELA LARAKLASQL APGNDKVWFL LGGLQLQTKN FDGAIASLNR SKTINPKNAD VLFALGSANF QQKKYQVAIE HYQAGLALKP NEADGLFDLG NAYYMIGRLP DAIAQYNKAV AQDKKFWPAI NNIGLISYEQ GNVDEAIKRW QSAVAIDKQA AEPLLALAVA LYTKGDRQQG ISLGEAALRI DPRYASIDFL KENLWGDRLL SDTKQFLELP RIQAALGQRE SAPTPRQ
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