| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2845 |
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| Symbol | |
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| ID | 3681487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 3525203 |
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| End bp | 3531007 |
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| Gene Length | 5805 bp |
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| Protein Length | 1934 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637718192 |
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| Product | Serine/threonine protein kinase and Signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor |
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| Protein accession | YP_323353 |
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| Protein GI | 75909057 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0515] Serine/threonine protein kinase
[COG3899] Predicted ATPase
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.218586 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.818872 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGCTA CTCAAGTCAG TATTCCTGGA TATATAGTTC ATGAACAACT CTATGATGGT
TCTAGAACTT TTGTCTACCG ATCTGTAAAA GAAACTGATA ACAAACCCGT AGTTATCAAA
CTGTTGAAAA ATCATTATCC CAGCTTTAGC GAACTAGTAC AATTCCGCAA CCAGTATACT
ATTGCTAAAA ATCTTAACTA TCCTGGAATC ATCCGAACCT ATAGCCTGGA ATCGTTCCAA
AATGGTTATA TCTTGGTAAT GGAAGACTTT GGGGGAATTT CCCTCAAGGA CTATTTTTTT
AAGAATTATG TTTCGTCACT TGATGAGTTT TTACAAATAG CGATCGCCCT CTGTAACACC
TTAGATATAC TCTACAAAGA GCGCATTATT CATAAAGATA TTAAACCCAG CAATATATTA
ATTAACCCTG AAACTAAGCA AGTTAAATTA ATCGACTTTA GTATTGCATC TTTACTACCA
AGAGAAACCC AAACTTTGGT TAACCCCAAT GTTTTAGAAG GAACACTAGC TTATATATCT
CCCGAACAAA CCGGGAGAAT GAATCGCGGA ATTGATTACC GGACAGATTT CTACTCTCTG
GGTGTAACTT TTTATGAATT ACTCACAAGA GAGTTACCTT TTCCAGCTAA TGAACCGATG
GAAGTAGTAC ATTGTCATAT TGCCAAAACA GCACCATTAG CGCATGAAGT TAATCCCCAA
ATCCCACCAA TATTATCAGC AATTGTCAGC AAATTGATGG CAAAAAATGT CGAAGACCGC
TATCAAAGTG CATTGGGATT AAAATATGAT TTAGAAAATT GTTTGTCTCA ACTCCAAGCA
ACTGGCAAAA TTGAGAGTTT TAAAATTGCC CAGAGGGATG TGTGCGATCG CTTCATCATT
CCTGATAAAC TTTATGGTAG AGAAGCCCAA ATAGAAATGT TGCTACAAGC CTTTGATAGA
GTCAGTCTTG GTGCAACAGA AATGATGCTG GTGGCTGGCT TTTCAGGAAT TGGTAAAACG
GCAGTTGTCA ATGAAGTGCA TAAACCGATT GTTAGACAAC GTGGTTATTT TATTAAAGGT
AAATTTGAGC AATTTCAACG CAATATTCCC TTCTCGGCCT TTGTCCAAGC GTTTCGTAAT
TTAATAGGTA AATTATTAAC AGAAAGCAAT AGCCAAATTC AGCAATGGAA AGTTCAGATT
TTAGAGGCAT TGGGTGAAAA TGGACAGGTA ATTATTGACG TTATTCCCGA ACTAGAACTC
ATTATTGGTC AACAACCACC CACAAAAGAC TTATCAGGTA GCGCAGCCCA AAATCGCTTT
AATTTATTAT TCCAGAAGTT CACTCACGTT TTTACTAGTA AAGAGCATCC ATTAGTAATA
TTTTTAGATG ATTTACAATG GGCGGATTTG GCATCATTAA ACTTAATGCA AATCTTAATT
GCTGATACAG AATATCTACT ATTAATAGGT GCATATCGTG ATAACGAAGT CAGCCCATCA
CATCCATTAA TGTTTACCTT GGGTGAAATT AAAAAATTAC CATCAATAAT TAATACAATT
ACCTTAACAC CACTGAGTCA AATACGCATC AATCAATTAG TGGCTGACAC ACTCAAATGT
ACAGAAGCTT TAGCCTGGAA TCTTTCACAA CTGGTATATC AAAAAACTCA AGGTAATCCA
TTTTTTAGTA CACAGTTTCT CAAAGCATTA CATCAGGAAA ATCTGATTCA ATTCAACTTC
TTTGAGGGAT ATTGGCAATG TGATATTACG GCAATCAACC AGCAATCACT TACTTCAGAT
GTAGTTGAAT TTATGGTATT TCAATTACAG AGATTATCTG CATCAACTCA AGATGTGCTG
AAATTAGCTG CTTGTATTGG TAACTATTTT GATTTATCAA TTTTAGCAAT TGTTTCCGGT
CAGACGGAGG TAGAAATTGC TACTGATTTG TGGCAAGCAT TACAGGAAGG TTTGATCCTA
CCAACTAGTA ATATTTATAA GTTTTATCAA CAAGATACAT TATTAGATCA TCAACGCATA
ACTAATGATA ATGGCAAAAG AGTATTCACT TATAAATTCT TACACGACCG AGTCCAACAA
GCAGCTTATT CTCTCATCCC TAATAATCAA AAAGCAGTAA CTCATCTAAA AATTGGAGAA
TTACTACGGC AAAATTTATC TCAAATAGAG CAAGAGGAAA AACTATTTGA TATTGTCGGA
CACTTGAACC GAGGACAAGA GCTAATTACT CAACTAAGTG AACGGGAAGC ATTAGCTAAA
CTCAACTTAC AAGCGGGAGT TAAAGCGAGA AATTCCACAG CTTATGCCGC CGCAACGGAG
TATTTACAAC TAGGCATTGA GTTGCTACAA ACAAACTGCT GGCAAACTCA GTATGAATTA
GCTCTCAACC TCCATATTGC GGCTGTTGAA GTTGCCTATC TCAATGGTGA CTTTGAGGAG
ATGGAAAAGA TAGCAGCAAT GGTGTTGCGA TCCGCTCAGA CAATTTTAGA CAAAGTGAAA
ATTTACACAA TTCAAATCGC GGCACAAACA ACCCAGAGCC AGATGTTAGA GGCGATTGCC
ATAGGAACAG ATGCACTTTC CCAATTAGGA GTAGAATTTC CTCGTGAACC CGATGAAGCT
GAAATTGCCA AGGTTCTACA AGCTATTACG AATCAACTCC AGAGCAGACA GATTGGGGAA
CTAGTTGATC TACCAGTCAT GACCGATCCT ACATCAGTGG CAGCAATGCA ACTATTAGGA
AGGTTATTTT CACCCATTTT CGTGGGAATA CCAGGTTTAT TACCTATTCT GAGCGCAAAG
ATGGTGAGTT TGTCACTCCA GTTCGGAAAT ACACCAACAT CGACGGTGGG GTATGCAATT
CATGGACTGG TGATGTGTGC TGTTTTGCAA GAAGTGGAAA CAGGCTACAG TTTTGGTAAA
TTAGCCCTCT CATTGCTGGA GCGTTTCAAT TTACCAGAGT ATAAATCCAT GACTCTACAT
CTGTTTGGGG ATTTTATTCA GCATCATCGG GAAACTTTGC AGGCAACAAA ATTAACACTG
AAAGATAGCT ATAGGATTGG TATGGATACT GGTGATTTTC TCCGTGCTGG CTACAGCATT
GTGGGTTATA GCCAGGTAAG ATTATTTAGT GGGGTGGAAT TAGATATTTG CGAATCTGAG
TTAGCAACTT ACAGCGCCGC CTTGGCTCAG GTTAAACAAT TTTCTCCGCA AGTTTATTTA
AACCTAACTT GGCAGACAGT CAAAAATTTG CGGGAACCTG TCAATCAACC AGATTGCTTA
ATTGGTAGTG CTTATGATGA AACACAGATG TTTCCTAAGC ATTTTCAGGA TCGTGAACTG
ACGGCTATCT CTACGGCTTA CATAGCCAAA CTGATGCTAG CTTACTTATG GGGAAATTAC
TCGCCTGCAA TAAGCTACAT TAAACAAATC AAGCTGTATT TAATGGCAGT ATCGGGATTA
ATTTGTGTTC CGATTTTTCA CTTTTACGCA GCCCTGACAT ATCTCGCTAT CTTCCGCACA
CAGTCAAAGC CAGAGCAGGC TGAAATCCTC GCCCAAATCG CAACCCATCA AACTCGTCTG
CATCATTCTG CACAAAATGC CCCTATGAAT CATTTACATA AATGGTATTT AGTTGAGGCA
GAAAAACAAC GGGTTTTAGG ATATTACTAT GAAGCGGGAG ACAGGTACGA TCGCGCTATT
GCTGGCGCTA AAGCAAATGG CTATATCCAA GAAGAAGGTT TAGCCAACGA ATTAGCAGCA
AAATTTTACC TGGATTGGGG TAGAGAAAAA GCTGCCATTT GGTATTTGCA AGAAGCCTAT
TATTGTTATG CTAAATGGGG AGCAAAAGCG AAAGTCGCCG ATTTAGAAAG ACGCTATCCG
CAGTTACTTG CCCCCATATT ACAGCAAAGC CGTTCGACCC TTTCCACCAA CGAAACTATC
TTCACCGTGG GGACTGTCAC AAAAAGTAGT TCTTCAGTCT CTAGCAGTAG CAGTAATGTC
TCAGATACCC TAGATTTAAC AGCAATTCTC AAAGCATCTC AAGCGATCTC TGGAGAAATC
GAACTAGAAA AACTGCTTTC GTCTTTACTG AGAATCATCA TCGAAAATGC TGGGGCTGAT
AAATGTGTGT TAATGCTGTT GCAAGACAAT CATTTATTAA TTCAAGGTTC AATTACCCAG
GGTTATAAGC CAATTATGTT ACCAAGTCTT CCCGTTGAAG ACAGCCTGGA AATTCCTCAC
AAACTCATTT ACAAAGTCAA GCATAGTCAA CACACTGTTG TTTTGTTGGA TGCAACCGCA
GATACCACCT TAGCCAATGA CCCATACATC ATCCGTCAAA AGCCTTTGAG TATTTTGTGC
AGCCCGATTT TGTATCAAGG TAAATTGCTG GGGATTTTAT ATCTAGAAAA TAATTTAGTG
AGAGGGGCAT TTACGAGCGA TCGCGTGCAA CTATTGAATT TACTTTGCAC ACAAGTTGCC
ATTTCTCTAG AAAATGCCCA ACTTTATCAA CGTTCTCAGG AAAATGCCCA ACAGTTAGAG
CGATCGCTGG AAAAATTACG GCTCAGTGAA GCCCGCTTTC AAAAACTGGC AAATAATGTT
CCTGGAATAA TTTATCAGAT CCGGATTAAG GCTGATGGTT CAGCTTCTAT ACCTTACGTT
AGTTCTGGGT GTCAAACACT TTATGAAATA GCAGCAGAAG ATTTCATGTC AGGGAAATAC
AGCTTGCGCG ATTTTGAACA TCCTGACGAC CGAGCAAAGG CGTTTCAAAT AGTTGTCGAG
TCAGCGAAAA ATCTCACCCC TTTTCAGCAT GAATGGCGCA TTATTACACC TAATGGAAAT
ATCAAGTGGG TAAAGGCTGC ATCCCAGCCA GAACGTGGTG AGGATGGTGA AATTGTATGG
GATGGCATTT TGATTGAAAT TAGCGATCTC AAACAAGCTG AACTGGATTT GCAACAAGCC
CAATTACAAA TCATTCAAAG TGAGAAAATG TCCGCCTTGG GTAACTTGGT GGCTGGTGTC
GCCCACGAAA TGAATAATCC TTTGGGCTTT ATTGCTGCCA GTCTCAAGCA AGCTAAACCT
ACCTTTGCCG ATATTCTCGA ACATTTGAAA ATCTATCAAG AAACTTTACC CGATAAAACC
GAAGAAATTC TCGATCACGA GTCGGAAATT GATTTGGAAT ACACCATAGA AGACCTGCCA
AAAATGCTGG ATTCTATGAC AATAGCTTGT GATAGGTTAA AAAATATTAG CACTTCCCTA
CGCACTTTCT CCCGTGCTGA TAGAGACTAC AAAGTACCAT TTAATCTTCA CGAAGGTATT
GACAGCACAA TCTTAATTCT CAAACATCGT CTCAAATCTA ACGAACAACG TCCCGCAATC
GAGGTAATAA CTAACTACGG GAATTTACCA CAATTAGAAT GTTTTCCTGG GCAATTAAAT
CAGGTATTTA TGAATATTTT AGTTAATGCA ATTGACGCAT TAGATGAATC GAATCACGGA
CGGAATTTTG AGGAGATTAA ATCTCATCCT AACCAGATCA CAATTACTAC ATCAATAGCA
GATAAATCTG TGAAAATCTC CATTGCTGAT AATGGTAAAG GTATGAGCGA AGAAGTTAAA
CACAAAATAT TTGACCATTT ATTTACTACC AAAGGTGTAG GTAAAGGTAC AGGTTTAGGG
TTGGCTATAG CTAAACAAAT TGTTGTGGAA AGCCACGGTG GCCAGTTGAA ATGTAACTCG
GCTTTAGGAG AAGGTACGGA ATTTATCATA GAAATACCCG TGTAG
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| Protein sequence | MIATQVSIPG YIVHEQLYDG SRTFVYRSVK ETDNKPVVIK LLKNHYPSFS ELVQFRNQYT
IAKNLNYPGI IRTYSLESFQ NGYILVMEDF GGISLKDYFF KNYVSSLDEF LQIAIALCNT
LDILYKERII HKDIKPSNIL INPETKQVKL IDFSIASLLP RETQTLVNPN VLEGTLAYIS
PEQTGRMNRG IDYRTDFYSL GVTFYELLTR ELPFPANEPM EVVHCHIAKT APLAHEVNPQ
IPPILSAIVS KLMAKNVEDR YQSALGLKYD LENCLSQLQA TGKIESFKIA QRDVCDRFII
PDKLYGREAQ IEMLLQAFDR VSLGATEMML VAGFSGIGKT AVVNEVHKPI VRQRGYFIKG
KFEQFQRNIP FSAFVQAFRN LIGKLLTESN SQIQQWKVQI LEALGENGQV IIDVIPELEL
IIGQQPPTKD LSGSAAQNRF NLLFQKFTHV FTSKEHPLVI FLDDLQWADL ASLNLMQILI
ADTEYLLLIG AYRDNEVSPS HPLMFTLGEI KKLPSIINTI TLTPLSQIRI NQLVADTLKC
TEALAWNLSQ LVYQKTQGNP FFSTQFLKAL HQENLIQFNF FEGYWQCDIT AINQQSLTSD
VVEFMVFQLQ RLSASTQDVL KLAACIGNYF DLSILAIVSG QTEVEIATDL WQALQEGLIL
PTSNIYKFYQ QDTLLDHQRI TNDNGKRVFT YKFLHDRVQQ AAYSLIPNNQ KAVTHLKIGE
LLRQNLSQIE QEEKLFDIVG HLNRGQELIT QLSEREALAK LNLQAGVKAR NSTAYAAATE
YLQLGIELLQ TNCWQTQYEL ALNLHIAAVE VAYLNGDFEE MEKIAAMVLR SAQTILDKVK
IYTIQIAAQT TQSQMLEAIA IGTDALSQLG VEFPREPDEA EIAKVLQAIT NQLQSRQIGE
LVDLPVMTDP TSVAAMQLLG RLFSPIFVGI PGLLPILSAK MVSLSLQFGN TPTSTVGYAI
HGLVMCAVLQ EVETGYSFGK LALSLLERFN LPEYKSMTLH LFGDFIQHHR ETLQATKLTL
KDSYRIGMDT GDFLRAGYSI VGYSQVRLFS GVELDICESE LATYSAALAQ VKQFSPQVYL
NLTWQTVKNL REPVNQPDCL IGSAYDETQM FPKHFQDREL TAISTAYIAK LMLAYLWGNY
SPAISYIKQI KLYLMAVSGL ICVPIFHFYA ALTYLAIFRT QSKPEQAEIL AQIATHQTRL
HHSAQNAPMN HLHKWYLVEA EKQRVLGYYY EAGDRYDRAI AGAKANGYIQ EEGLANELAA
KFYLDWGREK AAIWYLQEAY YCYAKWGAKA KVADLERRYP QLLAPILQQS RSTLSTNETI
FTVGTVTKSS SSVSSSSSNV SDTLDLTAIL KASQAISGEI ELEKLLSSLL RIIIENAGAD
KCVLMLLQDN HLLIQGSITQ GYKPIMLPSL PVEDSLEIPH KLIYKVKHSQ HTVVLLDATA
DTTLANDPYI IRQKPLSILC SPILYQGKLL GILYLENNLV RGAFTSDRVQ LLNLLCTQVA
ISLENAQLYQ RSQENAQQLE RSLEKLRLSE ARFQKLANNV PGIIYQIRIK ADGSASIPYV
SSGCQTLYEI AAEDFMSGKY SLRDFEHPDD RAKAFQIVVE SAKNLTPFQH EWRIITPNGN
IKWVKAASQP ERGEDGEIVW DGILIEISDL KQAELDLQQA QLQIIQSEKM SALGNLVAGV
AHEMNNPLGF IAASLKQAKP TFADILEHLK IYQETLPDKT EEILDHESEI DLEYTIEDLP
KMLDSMTIAC DRLKNISTSL RTFSRADRDY KVPFNLHEGI DSTILILKHR LKSNEQRPAI
EVITNYGNLP QLECFPGQLN QVFMNILVNA IDALDESNHG RNFEEIKSHP NQITITTSIA
DKSVKISIAD NGKGMSEEVK HKIFDHLFTT KGVGKGTGLG LAIAKQIVVE SHGGQLKCNS
ALGEGTEFII EIPV
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