Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_2710 |
Symbol | |
ID | 3682208 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | - |
Start bp | 3346090 |
End bp | 3347847 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637718055 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_323218 |
Protein GI | 75908922 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.132036 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.320847 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAAGCA TCAGCGAAGA TATTACTGAC GGCAATCAAG CTGAAGCGGC ACTGCGTGAA AGTGAAGCTA AATTTCGTTC GCTGATTCAA AATAGCTCCG ACATCATTGG TATTTTTGAA CCAGATGGAA CTATTCGCTA CGAAAGTCCA TCTGTTGAAA GAATTCTAGG ATATAAACCA GAAGAACTAG TCGGTAAAAA CGCTTTTGAT TTTATTCATC CCGATGATAT TGCTGGTAGT TCTGAAAGCT TTAATTACTT AATCCAAAAT TTAGGCGCGA CTGTACTAGT AGAGTCGCGT TTTCGACGCA AAGATGGTTC GTGGTGTTTT CTCGAATCAA CAGGTAGTAA TCTTCTAGCA GAGCCATCTG TGAAGGGCAT AGTTATTAAT TCTCGTGATA TTACCGATCG CAAGCTAGCA GAAGAGCGAT TAGTTCATGA TGCCCTACAT GATGTATTAA CAGGGTTGCC AAATAGAGTC TTATTCATAG ACCGCTTAAG ACGTGCGGTT GAGTATGCAA AACGATATTC GGATCATCTG TTTGCGGTGC TGTTCCTCGA TTTGGATCGC TTCAAGTTTA TCAACGACAG CCTGGGACAC ACAATTGGCG ACCAATTACT GGTGATTATT GCTCAAAGGC TGATAGAGTG TCTGCGACCT ACAGATATAG CTGCACGCTT TGGCGGAGAT GAGTTCATCA TTCTGCTAGA AGGTATTCAA GACATTAGTG ACACAGTGCG TGTCGTTGAG CGAATACAGG AGAAATTGTT AGTTCCGGTG GATTTAAGTG GCCATGAAAT TTTTACCACA GCTAGTATCG GTATTAGTTT GAGCGCCACA GGTTATGAGC AACCAGAAGA CCTTTTACGT AACGCCGACA TTGCGATGTA CCGAGCTAAG GCGCGGGGTA AGGCGTGTTA CGAAATATTT AATAGTGATA TGCACGTTCA GATAGTGGAA CGTTTGCAGC TAGAAAACGA CTTACGCAAA GCAATTGAAC GTCATGAGTT CCTAGTTTAT TATCAGCCTA TTGTGTCACT GGCAAGCGGG AGAATTATTG GTTTTGAAGC GCTTGTACGT TGGCTACATC CAGAGCAGGG AATTGTGTTC CCGGAGGAGT TTATGCCAAT CGCCCAAGAA ACCGGACTAA TTATCCCGAT TGATGCCTGG GTGTTGCGTG AGGCGTGTCG CCAGACAAGG CAGTGGCAGG AACAGATTCC CTCTCAATCA GTAAATTTAC ATCAGCAGCC TTTGAGCATC AGTATTAATC TTTGTAGTTC CCGATTCAGC CAAAAAAAGC TGCTGGAGGA TATTAATCAA GTACTACAAG ACACTGGTTT AGATGCACAG AGTTTGAAAT TGGAAATTAC AGAAAGCGTA ATTATGGAAA ATGGGGAAAA TGCTACTACT ATGCTCTATC AATTGAGAAA CTTAGGCATC GAATTAGCAA TTGATGATTT CGGTACAGGA TATTCTTCAT TAGGTCGTCT CCATAATTTT CCGATTAATG GGCTAAAGAT TGATCAATCC TTTGTTAGTG GGAGAGGTGT AGAAGCAGGC AATTTACACA TTGTGGAGAC TATAGTTACC CTTTCTAGCA AACTGGGTGT GGATGTAACA GCCGAGGGGG TGGAAACACC AGCGCAACTA CAAAGGCTTA GAGAGTTGAA ATGTGAATAT GGTCAGGGAT ACTTTTTCTC GGAACCATTG GATAGCGATT CGGCAAAGGC GTTAATTATG AGCAATCCCC AATGGTAG
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Protein sequence | MTSISEDITD GNQAEAALRE SEAKFRSLIQ NSSDIIGIFE PDGTIRYESP SVERILGYKP EELVGKNAFD FIHPDDIAGS SESFNYLIQN LGATVLVESR FRRKDGSWCF LESTGSNLLA EPSVKGIVIN SRDITDRKLA EERLVHDALH DVLTGLPNRV LFIDRLRRAV EYAKRYSDHL FAVLFLDLDR FKFINDSLGH TIGDQLLVII AQRLIECLRP TDIAARFGGD EFIILLEGIQ DISDTVRVVE RIQEKLLVPV DLSGHEIFTT ASIGISLSAT GYEQPEDLLR NADIAMYRAK ARGKACYEIF NSDMHVQIVE RLQLENDLRK AIERHEFLVY YQPIVSLASG RIIGFEALVR WLHPEQGIVF PEEFMPIAQE TGLIIPIDAW VLREACRQTR QWQEQIPSQS VNLHQQPLSI SINLCSSRFS QKKLLEDINQ VLQDTGLDAQ SLKLEITESV IMENGENATT MLYQLRNLGI ELAIDDFGTG YSSLGRLHNF PINGLKIDQS FVSGRGVEAG NLHIVETIVT LSSKLGVDVT AEGVETPAQL QRLRELKCEY GQGYFFSEPL DSDSAKALIM SNPQW
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