Gene Ava_2710 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_2710 
Symbol 
ID3682208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp3346090 
End bp3347847 
Gene Length1758 bp 
Protein Length585 aa 
Translation table11 
GC content43% 
IMG OID637718055 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_323218 
Protein GI75908922 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.132036 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.320847 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAGCA TCAGCGAAGA TATTACTGAC GGCAATCAAG CTGAAGCGGC ACTGCGTGAA 
AGTGAAGCTA AATTTCGTTC GCTGATTCAA AATAGCTCCG ACATCATTGG TATTTTTGAA
CCAGATGGAA CTATTCGCTA CGAAAGTCCA TCTGTTGAAA GAATTCTAGG ATATAAACCA
GAAGAACTAG TCGGTAAAAA CGCTTTTGAT TTTATTCATC CCGATGATAT TGCTGGTAGT
TCTGAAAGCT TTAATTACTT AATCCAAAAT TTAGGCGCGA CTGTACTAGT AGAGTCGCGT
TTTCGACGCA AAGATGGTTC GTGGTGTTTT CTCGAATCAA CAGGTAGTAA TCTTCTAGCA
GAGCCATCTG TGAAGGGCAT AGTTATTAAT TCTCGTGATA TTACCGATCG CAAGCTAGCA
GAAGAGCGAT TAGTTCATGA TGCCCTACAT GATGTATTAA CAGGGTTGCC AAATAGAGTC
TTATTCATAG ACCGCTTAAG ACGTGCGGTT GAGTATGCAA AACGATATTC GGATCATCTG
TTTGCGGTGC TGTTCCTCGA TTTGGATCGC TTCAAGTTTA TCAACGACAG CCTGGGACAC
ACAATTGGCG ACCAATTACT GGTGATTATT GCTCAAAGGC TGATAGAGTG TCTGCGACCT
ACAGATATAG CTGCACGCTT TGGCGGAGAT GAGTTCATCA TTCTGCTAGA AGGTATTCAA
GACATTAGTG ACACAGTGCG TGTCGTTGAG CGAATACAGG AGAAATTGTT AGTTCCGGTG
GATTTAAGTG GCCATGAAAT TTTTACCACA GCTAGTATCG GTATTAGTTT GAGCGCCACA
GGTTATGAGC AACCAGAAGA CCTTTTACGT AACGCCGACA TTGCGATGTA CCGAGCTAAG
GCGCGGGGTA AGGCGTGTTA CGAAATATTT AATAGTGATA TGCACGTTCA GATAGTGGAA
CGTTTGCAGC TAGAAAACGA CTTACGCAAA GCAATTGAAC GTCATGAGTT CCTAGTTTAT
TATCAGCCTA TTGTGTCACT GGCAAGCGGG AGAATTATTG GTTTTGAAGC GCTTGTACGT
TGGCTACATC CAGAGCAGGG AATTGTGTTC CCGGAGGAGT TTATGCCAAT CGCCCAAGAA
ACCGGACTAA TTATCCCGAT TGATGCCTGG GTGTTGCGTG AGGCGTGTCG CCAGACAAGG
CAGTGGCAGG AACAGATTCC CTCTCAATCA GTAAATTTAC ATCAGCAGCC TTTGAGCATC
AGTATTAATC TTTGTAGTTC CCGATTCAGC CAAAAAAAGC TGCTGGAGGA TATTAATCAA
GTACTACAAG ACACTGGTTT AGATGCACAG AGTTTGAAAT TGGAAATTAC AGAAAGCGTA
ATTATGGAAA ATGGGGAAAA TGCTACTACT ATGCTCTATC AATTGAGAAA CTTAGGCATC
GAATTAGCAA TTGATGATTT CGGTACAGGA TATTCTTCAT TAGGTCGTCT CCATAATTTT
CCGATTAATG GGCTAAAGAT TGATCAATCC TTTGTTAGTG GGAGAGGTGT AGAAGCAGGC
AATTTACACA TTGTGGAGAC TATAGTTACC CTTTCTAGCA AACTGGGTGT GGATGTAACA
GCCGAGGGGG TGGAAACACC AGCGCAACTA CAAAGGCTTA GAGAGTTGAA ATGTGAATAT
GGTCAGGGAT ACTTTTTCTC GGAACCATTG GATAGCGATT CGGCAAAGGC GTTAATTATG
AGCAATCCCC AATGGTAG
 
Protein sequence
MTSISEDITD GNQAEAALRE SEAKFRSLIQ NSSDIIGIFE PDGTIRYESP SVERILGYKP 
EELVGKNAFD FIHPDDIAGS SESFNYLIQN LGATVLVESR FRRKDGSWCF LESTGSNLLA
EPSVKGIVIN SRDITDRKLA EERLVHDALH DVLTGLPNRV LFIDRLRRAV EYAKRYSDHL
FAVLFLDLDR FKFINDSLGH TIGDQLLVII AQRLIECLRP TDIAARFGGD EFIILLEGIQ
DISDTVRVVE RIQEKLLVPV DLSGHEIFTT ASIGISLSAT GYEQPEDLLR NADIAMYRAK
ARGKACYEIF NSDMHVQIVE RLQLENDLRK AIERHEFLVY YQPIVSLASG RIIGFEALVR
WLHPEQGIVF PEEFMPIAQE TGLIIPIDAW VLREACRQTR QWQEQIPSQS VNLHQQPLSI
SINLCSSRFS QKKLLEDINQ VLQDTGLDAQ SLKLEITESV IMENGENATT MLYQLRNLGI
ELAIDDFGTG YSSLGRLHNF PINGLKIDQS FVSGRGVEAG NLHIVETIVT LSSKLGVDVT
AEGVETPAQL QRLRELKCEY GQGYFFSEPL DSDSAKALIM SNPQW