Gene Ava_2620 details

Gene Information

• Locus tag: Ava_2620
• ID: 3681903
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Anabaena variabilis ATCC 29413
• Kingdom: Bacteria
• Replicon accession: NC_007413
• Strand: +
• Start bp: 3241015
• End bp: 3244413
• Gene Length: 3399 bp
• Protein Length: 1132 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637717966
• Product: phycobilisome protein
• Protein accession: YP_323129
• Protein GI: 75908833

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.00272718
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTGTTA AGGCGAGTGG AGGAAGCTCG GTTGCGCGCC CGCAACTATA TCAAACCCTA 
GCTGTGGCAA CAATCACCCA AGCGGAACAG CAAGACCGCT TTTTAGGCAG GGGTGAACTA 
GATGAACTAG CAAGCTATTT TGCATCTGGT GCAAAACGTC TAGAAATTGC CCAACTTCTC 
ACAGAAAATT CCGAGATTAT TGTTTCTCGT GCTGCTAACC GGATTTTTGT TGGTGGTTCG 
CCAATGGCTT TCTTGGAAAA GCCGAGAGAA CCAGAACTGG CAATGGCTGC TGTTGGTGGT 
GGTGGAGATG TCAGAGAGAG CATGAAGTTG GGAACTGTCA CCTATGTGGA AACCCGTGGT 
GGATTCCTAG AAAACTTGCG CTCTATCTTT AATACATCTC CCAGTGGTCC AACTCCTCCA 
GGGTTTAGAC CAATCAACAT TGCTCGTTAC GGCCCAAGCA ACATGGCCAA GAGCTTGCGG 
GACTTGTCCT GGTTCTTGCG CTATGCTACT TATGCGATCG TGGCTGGCGA CCCTAACATC 
ATTGTGGTGA ACACAAGAGG TTTGCGGGAA ATTATCGAAA ATGCTTGCTC TGGTGAAGCA 
ACCATTGTTG CTTTGCAGGA AATCAAAGCT GCATCACTTT CTTATTTCCG TAAAGATCCA 
GAAGCCACAG AGATTGTGTC TCAATACATG GATGTTTTGA TCACAGAATT CAAAGCACCC 
ACACCATCTA ATAAGCTGCG TCAACGTCCC TCTGGTGACC AACAAGGCTT ACAACTACCT 
CAAATTTACT TCAGTGCGGC TGAAAGAAGA CCCAAGTTTG TGATGAAACC GGGGTTATCA 
GCGACTGAGA AAAATGAAGT AGTAAAAGCA GCTTATAGAC AAATCTTTGA GCGCGATATT 
ACTCGTGCTT ACAGCTTGTC AATCTCTGAC CTAGAATCCA AAGTTAAGAA CGGCGACATC 
TCTATGAAGG AGTTTGTCCG TCGTTTAGCA AAATCTCCTC TTTACCAAAA ACAGTTTTAC 
CAACCTTTTA TTAACAGCCG CGTTATCGAA CTAGCTTTCC GTCACATTTT GGGACGGGGG 
CCAAGTAGCC GTGAAGAAGT TCAAAAATAT TTCTCAATCA TTTCTAACGG CGGTCTACCA 
GCTTTAGTAG ATGCTTTGGT TGATTCGGCA GAATATGGGG ACTACTTTGG AGAAGAGACA 
GTACCTTACC TACGTGGTTT AGGTCAAGAA GCTCAAGAAT GTCGTAACTG GGGACCACAG 
CAAGACCTGT TTAACTACAG TGCGCCTTTC CGTAAAGTAC CTCAGTTTAT TACCACATTT 
GCGGCGTACG ATCGCCCACT ACCAGATCAA CACCCATACG GTTCTGGTAA TGACCCATTA 
GAAATTCAGT TTGGGGCAAT TTTCCCGAAA GAAACCCGCA ACCCCAGCAC CAGTCCCGCA 
CCTTTTGGTA AGGACACCAG ACGGATCTTG ATTCACCAAG GCCCTGGAAT TAACAACCAA 
GTTAGTAACC CCAGCGCACG AGGTATAGCT CCTGGTTCTC TTGGGCCTAA AGTGTTCAAG 
TTAGATCAAT TACCTGGAAC TATCGGTAGA AAAGCAGCTA AGGGTGCAAG TGTCAAGTTC 
TCCGAAAGCT CAACCCAAGC AGTAATTAAA GCTACTTACT TGCAAGTTTT CGGTCGGGAT 
GTGTATGAAG GTCAACGGCT GAAAGTCCAA GAAATTAAGC TGGAAAACGG CGAAATTTCT 
GTAAGAGAGT TTGTCAGAGC TTTGGCTAAA TCGGATCTAT TCCGTAAGCT TTACTGGACT 
CCTTTCTATG TTTGTAAGGC GATCGAATAT ATCCACCGTC GCTTATTAGG TCGTCCTACC 
TACGGTCGTC AAGAAAACAA CAAGTACTTC GATATCGCCT CTAAGAAGGG CTTATATGCT 
GTAGTTGATG CCATTCTGGA CAGCCTAGAG TATACCGAAA CCTTCGGCGA AGATACAGTT 
CCTTACGAAC GCTATCTAAC TCCGGCTGGT GTAGCACTCA GACAGCTACG TGTTGGTACT 
ATCCGGGAAG ATGTGGCGAA TGTTGAAAAA CAAGAAACAC CACGTTTTGT AGAACTGGGT 
ACAGTCAAGG AAAATCGGAC TCAACCAGAT ATCGATTTCC GCATCAACCA AGGTGTTACC 
AAGCAGCGTG AACAAACCAA GGTGTTCAAG CGGGTAGCGG CTAACAACGA TAAAACTGCG 
ACCCAAACCT TGATTAGTGC GGCTTATCGG CAAATTTTTG AGCGTGATAT TGCACCATAC 
ATTGCTCAGA ATGAATTTTC AGGCTGGGAA AGCAAACTGG GTAACGGTGA AATCACTGTA 
AAAGAATTTA TTGAAGGTTT GGGTTACTCT AACCTCTACC TGAAGGAGTT CTACACACCA 
TACCCCAACA CCAAAGTAAT CGAGTTGGGA ACCAAGCACT TCCTCGGTCG CGCACCAATT 
GACCAAGCAG AAATCCGCAA GTATAACCAA ATTTTGGCTA CCCAAGGGAT TCGGGCTTTT 
ATTAACGCTT TGGTAAATAG CCAGGAGTAC AACGAGGTAT TTGGTGAAGA TACAGTACCT 
TACAGACGCT TCCCGACCTT ACCTGCGGCG AACTTCCCCA ATACCCAAAA GCTGTATAAC 
CAACTCACCA AACAAAATAA TGATGTGGTT ATCCCCAGCT TTAAGCCTGT ACAAGCGCGG 
ATACAGTCTG ATAAGACACC AATTTTAGCG AAGGCGATCG CAGATTTAGC AGCCCAAGCC 
AAACAAATCG ACAAGAGCAA GCCTCTGTTC ATTGAATTGG GTCGCTCCTA CAACGACGGT 
CGCGGACAGT CTGTAGAAGT GGGTGTGGGT ACAACTCGTC GTAAACCTGC ACGTATTTAT 
CGCCTGACCG ATGGTATCGG CCAAGCAGAA AAACAACTGG TAATTAACGC GATTTACCGT 
CAGGTATTGG ATGTATTTAG CGGACAAGTA CCAGATTATT ACCGCCGCAC AGAACTAGAT 
AGCAAACTGC GGAATGGGGA AATTTCTGTA CGGGAATTCG TGCGGGAAAT AGCTAGTTCC 
GAAATCTATC GCAAGCGTTT CTACACACCT TATCCCAACA CCAAGGTAAT TGAATTCTTA 
TTCCGTCACC TGTTGGGACG TGCGCCAGCA ACTCAAGGCG AAATTCGTCA ATATAACAAG 
CTGCTAGCTG ATCACGGTTT GCGTGCTGCG GTAGAAGCAA TTGTGGATAG TCCAGAATAC 
AGCCGCTACT TCGGTGAAGA TGTGGTTCCT TACCCACGCT TCCCATCACT ACCCGCAGGT 
AACTACCTCG GTAGCGTCCA AGCAGCAGCT GACTTGGTAA AACAATCTTG GTCTAGCTTA 
TCGCCATCCA CCCTTACAGG TAGACCAGGC GATCGCTAA 

 

Protein sequence

MSVKASGGSS VARPQLYQTL AVATITQAEQ QDRFLGRGEL DELASYFASG AKRLEIAQLL 
TENSEIIVSR AANRIFVGGS PMAFLEKPRE PELAMAAVGG GGDVRESMKL GTVTYVETRG 
GFLENLRSIF NTSPSGPTPP GFRPINIARY GPSNMAKSLR DLSWFLRYAT YAIVAGDPNI 
IVVNTRGLRE IIENACSGEA TIVALQEIKA ASLSYFRKDP EATEIVSQYM DVLITEFKAP 
TPSNKLRQRP SGDQQGLQLP QIYFSAAERR PKFVMKPGLS ATEKNEVVKA AYRQIFERDI 
TRAYSLSISD LESKVKNGDI SMKEFVRRLA KSPLYQKQFY QPFINSRVIE LAFRHILGRG 
PSSREEVQKY FSIISNGGLP ALVDALVDSA EYGDYFGEET VPYLRGLGQE AQECRNWGPQ 
QDLFNYSAPF RKVPQFITTF AAYDRPLPDQ HPYGSGNDPL EIQFGAIFPK ETRNPSTSPA 
PFGKDTRRIL IHQGPGINNQ VSNPSARGIA PGSLGPKVFK LDQLPGTIGR KAAKGASVKF 
SESSTQAVIK ATYLQVFGRD VYEGQRLKVQ EIKLENGEIS VREFVRALAK SDLFRKLYWT 
PFYVCKAIEY IHRRLLGRPT YGRQENNKYF DIASKKGLYA VVDAILDSLE YTETFGEDTV 
PYERYLTPAG VALRQLRVGT IREDVANVEK QETPRFVELG TVKENRTQPD IDFRINQGVT 
KQREQTKVFK RVAANNDKTA TQTLISAAYR QIFERDIAPY IAQNEFSGWE SKLGNGEITV 
KEFIEGLGYS NLYLKEFYTP YPNTKVIELG TKHFLGRAPI DQAEIRKYNQ ILATQGIRAF 
INALVNSQEY NEVFGEDTVP YRRFPTLPAA NFPNTQKLYN QLTKQNNDVV IPSFKPVQAR 
IQSDKTPILA KAIADLAAQA KQIDKSKPLF IELGRSYNDG RGQSVEVGVG TTRRKPARIY 
RLTDGIGQAE KQLVINAIYR QVLDVFSGQV PDYYRRTELD SKLRNGEISV REFVREIASS 
EIYRKRFYTP YPNTKVIEFL FRHLLGRAPA TQGEIRQYNK LLADHGLRAA VEAIVDSPEY 
SRYFGEDVVP YPRFPSLPAG NYLGSVQAAA DLVKQSWSSL SPSTLTGRPG DR