| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2557 |
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| Symbol | |
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| ID | 3679462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 3157904 |
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| End bp | 3159400 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637717903 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_323067 |
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| Protein GI | 75908771 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATATT CTCTATTAGC TAATGCTCCT CAAGCTCGTC AAACAAAACA ACAGTTTGCT
AGACCAGAAG ACCAACTATC TTATGAACTA GGTAAGGCAG TTAAAGAATT ACCGCCACTT
TATACTAGAT TATTAGCAGG AACCATTAGT TTAGTAGTAT TTGGGACGAT CGCTTGGGCT
GCTCTCTCAG AAATAGACGA AGTAGCTGTT GCACAAGGGG AATTAATCGC CTCCGCCCAG
GTCAGACCCG TAACATCCCT TGGTGATGGC ACAATTAAAG CCATTAAAGT TCAAGAAGGC
GATCGCGTCA CGAAAGATCA AGTTTTAATT CAACGCGACC CAGACCTCAA ACAAACTGAT
GTCACCCGAC TAGCCCAATC AACTAAACTG ATTCAACAAG ACATCCAGCG TTTGCAAGCA
GAACGTATTG GTGGACAAAC CACTGGTACA CCAATCCAAG ATGAACTTTT AAAATCTCGC
CTCCGCGACT ACCAAGCACG CCAAGCCGCA GCCGAAGCAG AAGCCAGCCG TCAGCGATCG
CTCATTGACC AAGCCAGAGT TCGTCTCATT CGGTTACAAG ATAATTTAGT CAATGCTAGA
ACTAGTGTTG CCAATGCCAA AACGAACCTG TTTAATGCTA GAAGCATCAG CAGCAAAGTA
GAAGAAAACC TCGAAATTGC TCAAAGTAGA GAGAAAAATC TACGTATCCT CATCACTCCT
GGGGCTGTTC CGCGAGTTGA TTATCTAGAA GCGAGAGAAA GATTAACTCG CGCTCAAACA
GATATTACTA GGGCTAAAGA TGAAGTCATC AACGCCCAAA ATCGCTTAAC AGAGGCTGAA
GATAAAGTTA CATCTTTAGA AAAAGATATT TCTGCACAAG ACCAAGAAAT TCGCCAAGCC
GAACAAGCGT ATCAAGCTGC TCGTAATCAA GCGCAACGCG TAGTATCAGA GCGCCAAAGT
GAAATCCTGA CAGAAATGAA CAAGCGCAAA GAAGAACTAA CCAACGTTTC TGGACAATTG
GAGCAAGCCA AAAAACAAAC AGACGGTGAA ACCATCAAAG CTCCCGTTGC TGGCACAATT
TATAAAATCA AAGCCACCAA AGGGCCAGTA CAGTCAGGCG AAGAGTTATT ATCAATCTTG
CCAGAAGGCG AAGAGATGCT CCTAGAAGTG AAAGTTCTCA ACCGTGATAT TGGGTTTATT
CGCAAAGGAA TGAGAGCTAA AGTAAAAATG GCAACTTTCC CCTTCCAAGA ATTCGGCACA
ATTGAGGGTG AAGTTGCACA AGTCAGTCCT AACGCCACCA TAGACAAAGA ATTAGGCTTA
GTTTTTCCCA CCAGAATTAA ATTAAATCAG CACTTCGTCA GCGTTCGCGG TCAAAATGTG
ACATTTACAC CAGGAATGGC TGCAAGTGGT GAAATTGTCA CTCGGAAAAA ATCAATTTTG
ACCTTCATTA TGGAACCAGT AACCCGCCGA TTCAGTGAAG CATTTTCTGT CAGATAG
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| Protein sequence | MKYSLLANAP QARQTKQQFA RPEDQLSYEL GKAVKELPPL YTRLLAGTIS LVVFGTIAWA
ALSEIDEVAV AQGELIASAQ VRPVTSLGDG TIKAIKVQEG DRVTKDQVLI QRDPDLKQTD
VTRLAQSTKL IQQDIQRLQA ERIGGQTTGT PIQDELLKSR LRDYQARQAA AEAEASRQRS
LIDQARVRLI RLQDNLVNAR TSVANAKTNL FNARSISSKV EENLEIAQSR EKNLRILITP
GAVPRVDYLE ARERLTRAQT DITRAKDEVI NAQNRLTEAE DKVTSLEKDI SAQDQEIRQA
EQAYQAARNQ AQRVVSERQS EILTEMNKRK EELTNVSGQL EQAKKQTDGE TIKAPVAGTI
YKIKATKGPV QSGEELLSIL PEGEEMLLEV KVLNRDIGFI RKGMRAKVKM ATFPFQEFGT
IEGEVAQVSP NATIDKELGL VFPTRIKLNQ HFVSVRGQNV TFTPGMAASG EIVTRKKSIL
TFIMEPVTRR FSEAFSVR
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