| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2548 |
|---|
| Symbol | |
|---|
| ID | 3679452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 3151356 |
|---|
| End bp | 3152066 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637717893 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_323058 |
|---|
| Protein GI | 75908762 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000000944763 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAA ACTCACATGG TCAATCCCCA GGTAATGAAC AAGTGGAGTC ATCAGCTGTA
AAAGATGACA ATCTTCAGAA AAGCCGACGC AAACCATCAG GCGATCGCGG GCGGCAAAGA
CGTGATTTAA TCCTCGATAC GGCTGCCAAT TTGCTAGCAG AGGGAGGGAC TGAAGCTATC
AATACCAACG CCTTAGCCGA TCGCGCCAAT ATTTCCATTG GGTCAGTGTA TCAGTACTTT
TCCAACAAGG AGTCCATCCT CACGGCCTTA GGGGAGCGAT ATATGCAGCA ATTAAGCAGG
AATACAGTAG CAGCCTTACA ACAGGATGTC TCTGGTCTAG ATTTTGCCGC TATGGTTGAT
CGAGTAATTG ACCCCATGAT TGCCTTTGAG CGCCAGCATC CCGCTTTTAG ACATTTAAAC
GCCGGTCAAG AAGGGGAAGG TATCCTGGCT GAAGGAGCCA AACGAGTTGA TCAAGAAATA
CTAGCAACCA TCTATGATTT GCTGCTGAGA GTTTGCCCTC ATCTCCACCC CACCCAGGGT
TGGCAAATTG CGCGGGTGAC AAAAGCCCTT TATAAAGGCA TGAGCTATTT AATCCAGCAA
GAAAAAGAGA TTCAAAACGC CGGTGGAGAT ATTAACAACA TGATTGCTGA TATGAAGCGG
ATGATGGTGA CTTACTTAGA AGACCAGTTG GGACAATTAA CTGTGGGATA G
|
|---|
| Protein sequence | MSKNSHGQSP GNEQVESSAV KDDNLQKSRR KPSGDRGRQR RDLILDTAAN LLAEGGTEAI
NTNALADRAN ISIGSVYQYF SNKESILTAL GERYMQQLSR NTVAALQQDV SGLDFAAMVD
RVIDPMIAFE RQHPAFRHLN AGQEGEGILA EGAKRVDQEI LATIYDLLLR VCPHLHPTQG
WQIARVTKAL YKGMSYLIQQ EKEIQNAGGD INNMIADMKR MMVTYLEDQL GQLTVG
|
|---|
| |