| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2414 |
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| Symbol | ispD |
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| ID | 3683096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 3002007 |
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| End bp | 3002693 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637717759 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_322926 |
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| Protein GI | 75908630 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00000160472 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000172446 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | GTGTATTTAC TAATTCCCGC CGCCGGTGTT GGCAAAAGAA TGGGATGTGA CCGCAATAAG
CTGCTGCTAG AAGTGCGATC GCAACCTATT ATTGCTTGGA CTCTTTTAGC TGCACAAGCA
GCCAGTGAAA TTAGTTGGAT TGGGATTATT TCCCAACCCA CTGACTGGCC AGATTTTAAA
TCCATTCTGG CTAACTTACA GCTGACTAAA CCAGTGGAAT TTATCTTAGG AGGTTCCACT
AGGCAAGAAT CGGTTTACAA CGGCTTACAG GCGCTACCAA AAGCCGCAGA GCAAGTTTTA
ATTCATGATG GTGCTAGATG TCTGGCGACA CCGAATTTAC TCAACTCCTG CGCTCAGGCA
ATTCGTCACT GTTCCGGCTT GATTGCGGCT GTCCCGGTAA AAGATACGAT TAAAGTTGCG
GATGAAGATG GCATAATTCA AAGTACACCA GACAGACGCA ATCTTTGGGC AGCACAAACC
CCCCAAGGAT TTAACGTTGA GTTGTTGAAA CAGTGCCACG CTGAAGGTGT TCGTCAAGGT
TGGGAAGTGA CTGACGATGC TGCTTTATTT GAAAAGTGCG GTATCGAAGT GCAAATTGTG
GAAGGTGAGG AAACAAATTT GAAAGTAACC ACTCCCCAAG ATTTAGCGAT CGCTGAATTT
ATTCTTAACA GTCGAGACAA TTCCTAA
|
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| Protein sequence | MYLLIPAAGV GKRMGCDRNK LLLEVRSQPI IAWTLLAAQA ASEISWIGII SQPTDWPDFK
SILANLQLTK PVEFILGGST RQESVYNGLQ ALPKAAEQVL IHDGARCLAT PNLLNSCAQA
IRHCSGLIAA VPVKDTIKVA DEDGIIQSTP DRRNLWAAQT PQGFNVELLK QCHAEGVRQG
WEVTDDAALF EKCGIEVQIV EGEETNLKVT TPQDLAIAEF ILNSRDNS
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