Gene Ava_2167 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_2167 
Symbol 
ID3679880 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp2681428 
End bp2681853 
Gene Length426 bp 
Protein Length141 aa 
Translation table11 
GC content42% 
IMG OID637717510 
ProductBeta-Ig-H3/fasciclin 
Protein accessionYP_322682 
Protein GI75908386 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2335] Secreted and surface protein containing fasciclin-like repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.277927 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACAGAA ACTTATCAAA ACACATGGCT GACATTGTTG ATACTGCTGT AAATGCTGGC 
TCCTTTAACA CTTTAGTTGC TGCGGTTAAG GCTGCTGGGC TAGTAGATAC TCTCAAAGGT
GTTGGTCCAT TCACAGTTTT TGCACCTACC GATGAAGCAT TTGCTAAACT GCCACAAGGT
ACTGTGGATG CTTTGCTAAA AGACATTCCC AAGCTCAAGA AAATCCTGAC TTATCATGTT
GTTTCGGGTA AAGTTCTAGC TGCTGATGTA GTTAAGCTGA AGTCAGCCAC TACTGTACAG
GGTTCAGATG TAAAAATCGA CGCATCTAAT GGTGTCAAAA TAAATGATGC TAAAGTTGCG
ACTCCCGATG TTGCTGCTGA TAACGGTGTT ATTCATATAA TTGATACCGT GCTGATTCCT
GCGTAA
 
Protein sequence
MYRNLSKHMA DIVDTAVNAG SFNTLVAAVK AAGLVDTLKG VGPFTVFAPT DEAFAKLPQG 
TVDALLKDIP KLKKILTYHV VSGKVLAADV VKLKSATTVQ GSDVKIDASN GVKINDAKVA
TPDVAADNGV IHIIDTVLIP A