| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2148 |
|---|
| Symbol | |
|---|
| ID | 3680095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 2656206 |
|---|
| End bp | 2659019 |
|---|
| Gene Length | 2814 bp |
|---|
| Protein Length | 937 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637717491 |
|---|
| Product | Cache sensor hybrid histidine kinase |
|---|
| Protein accession | YP_322663 |
|---|
| Protein GI | 75908367 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.198843 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGTGA GTAACACAAA GCCTTCTTTG CAGCGCCAAA TTAAAACTAT GATTCGTTCT
AGTGTTCAAA CTGCTCAAAA GCTACCTTTG CGCTTGATTT TGGTTGTTCC TTTTGTGCTG
CAAATTTTCA CAGCAGTAAG TCTTGTAGGT TATCTCTCTT TTAAAAATGG ACAGAAGGCA
GTAAATGAAC TCGCTGACCA GTTAATTGTA AAAGTGAATG GGCTAGTTGA TCAACATCTT
GATACTTACT TAGCAGTTCC TCGCCAGATC AATCAAATCA ATGTGGATGC TACGAATTTA
GGAATGCTGA ATCTAGAAAA CTTTCAGACT ACAGGACGTT ATTTCTGGCA GCAAATGCAG
GTATTTAATG TTGGTTATAT TAGTTTTGCT AACCCCCAAA GAGAATTTAT CGGAGTTGAA
CGTTTAGATA AAGGTAGCCT ATTAATTAAT GAAGTTTCCC AAGAAAAGGG GATTGGCAAG
CTGTATGTTT ACAATACTAA TAATCAAGGC GATCGCCAGC AATTAATAGC GGTCAAAGAT
TACAATCCCC ATGTGGAAGC TTGGTATGCA GATGCAGTTA AGGTAGGGAA ACCTATCTGG
AGTCAGATTT ATTCATGGGA AGATAAACCA GAAGTTTTAT CTATATCTGC AAGTTATCCC
ATCAATGACA GTAATAATAA ATTTGTTGGT GTGATTAGTG TTGATTTAAT ACTATCGCAA
ATTAACAGCT TTTTAGCCAA TTTGAAAGTC GGACAAACAG GACAAATATT TATTCTAGAA
CGTTCTGGAA TGATAGTTGC TTCTTCCACT AGTGAAGCAC CATACAAAGT AATTAGCGGC
AAAGCACAAA GGCTATCGGC ACATCAGAGT CAAAATTATT TACTTCGAGA AACAACGGAT
TATCTGCAAC AAAAATTCGG TCAATTAAAA AATGTTAAGA GTTATCAAGA AACTGTATTG
CAACTACGAC ATGAAAGACA TTTTGTGCAA GTAAGACCTT GGAAAGATAA ATTAGGCTTG
GATTGGTTAG TGATTGTTGT TGTTCCTGAG AGCGACTTTA TGGCACAAAT TAATACCAAC
AATCGCACAA CTGTTTTACT TTGTTTGGGG GCGCTAATTA TAGCGACGGC AATGGGTGTG
TATACTTCCC GTTGGATTGC CCGTCCTGTT GTGCAGTTAA CTCAAGCTAG TAGTGCGATC
GCCTCTGGCA ACCTTGACCA AGAAGTGACG ATTTCTGGCT TAAAAGAATT GAGTATGCTT
GCCACATCTT TTAATCAAAT GGCAGGACAA CTACGTGATA GTTTCGCAGA ATTAGAAAAA
ACCAATCAAG AATTAGAAAA CAGAGTTGCG GAACGAACGG CGGAAATCAC AGCAGCTAAA
GAAACGGCTG ATGCTGCTAA CCGTGCCAAA AGTGAATTTT TGGCTAACAT GAGCCATGAA
TTACGCACCC CACTCAATGG TATTCTCGGC TATGCACAAA TTTTGCAGAT GGATTCCAAT
ACTAGTGATG AGCAAATGCA AGGTTTGAAC ACTATTTATG AGTGTGGTTC TCATTTACTG
ACTTTAATTA ATGATATTTT AGATATTGCC AAAATTGAAG CTAAAAAACT AGAATTATAT
CCTAAAGAAT TTGATTTAAG AAAATTATTA CTCGGTGCTT GTGAGATGTG CCGAATTAAA
GCAGATCAAA AAGAACTTAT TTTTAAATAT CATTTAAATA ATCGTATTCC TGCTAATATT
TTCGCTGATG AAAAACGGAT ACGCCAGGTT TTAATTAATA TTCTGAGTAA CGCTATTAAG
TTTACAGATC ATGGTACAGT CACTTTTGAT GTAGAAGTAG TTGCCTGTAC TGGAACAAAA
TTAATTACCA ATACAAATCA GTTACTGCCA GTTCATCAAC TGAGATTCCA CATTGAAGAT
ACAGGCATTG GGATGACTGA TGAACAACTA AAAAAAATAT TTTTGCCCTT TGAGCAAGTA
GGAGATAATT TGCATAAATC AGAGGGAACA GGTTTAGGAC TAGCAATTAG TAGTCAAATT
CTAGAATTGA TGGGTAGTGA TCTTAAAGTT GAGAGTGTAT ATGGTAAAGG AACTAAGTTT
TGGTTTGATT TAGATTTACC TATAGTTGAT ACTGGGAAAT TCTCTTTATC AGTTGAAGGT
CAAAAAAATA TTATTGGCTA TGAAGGGAAG ACAAGAAGTA TCTTAATTAT TGATAGTAGT
TGGGAAAATC GTTCTATTTT CGCCAATTTA TTGTCATCCT TAGGGTTTAA GTTGATTGAG
GTTAGTAATC TACAAGAGAG TTTAGATAAG ATAAAAACTG AACATCCCGA TTTAATTATT
GCTGATATCG CTATGCCGGA AATAAATAAC TTGCAGGCGA CAAAAAAGAT GCGGTCGCAA
GTAGAATTTG CAAATTTGGT GATTATTGCT TCGTCGGCTA GTGTATCTGA ATATACTCGT
CAGCAAAGTC AAGAAGCCGG TTATGATGAT TTTTTAGCAA AACCTGTAAA GGTTGAAGAA
TTATTTAATA TGTTACAAAC TTATTTATCT TTGAAATGGA TTTACTCACT TAATGATGAT
TCCTCAGCTA AAATTTCAAC TACAGAAGAA ATTATATTTC CCCCACCTAC AGAATTGTTT
AACTTATATC AAGCTGCTAA GGCTGGTTAT GTAGTTGGTA TTCAAGAAGA GATCATCAGA
ATTCAGCAAT TAGATAAAAG ATATACGCGT TTTGCTGTTA AAGTTTCAGA ATTAATAGCA
GAGTTTGAAG ATGAGGCAAT TGTTGCAATG ATTCAACCTC ATCTATCATA TTGA
|
|---|
| Protein sequence | MPVSNTKPSL QRQIKTMIRS SVQTAQKLPL RLILVVPFVL QIFTAVSLVG YLSFKNGQKA
VNELADQLIV KVNGLVDQHL DTYLAVPRQI NQINVDATNL GMLNLENFQT TGRYFWQQMQ
VFNVGYISFA NPQREFIGVE RLDKGSLLIN EVSQEKGIGK LYVYNTNNQG DRQQLIAVKD
YNPHVEAWYA DAVKVGKPIW SQIYSWEDKP EVLSISASYP INDSNNKFVG VISVDLILSQ
INSFLANLKV GQTGQIFILE RSGMIVASST SEAPYKVISG KAQRLSAHQS QNYLLRETTD
YLQQKFGQLK NVKSYQETVL QLRHERHFVQ VRPWKDKLGL DWLVIVVVPE SDFMAQINTN
NRTTVLLCLG ALIIATAMGV YTSRWIARPV VQLTQASSAI ASGNLDQEVT ISGLKELSML
ATSFNQMAGQ LRDSFAELEK TNQELENRVA ERTAEITAAK ETADAANRAK SEFLANMSHE
LRTPLNGILG YAQILQMDSN TSDEQMQGLN TIYECGSHLL TLINDILDIA KIEAKKLELY
PKEFDLRKLL LGACEMCRIK ADQKELIFKY HLNNRIPANI FADEKRIRQV LINILSNAIK
FTDHGTVTFD VEVVACTGTK LITNTNQLLP VHQLRFHIED TGIGMTDEQL KKIFLPFEQV
GDNLHKSEGT GLGLAISSQI LELMGSDLKV ESVYGKGTKF WFDLDLPIVD TGKFSLSVEG
QKNIIGYEGK TRSILIIDSS WENRSIFANL LSSLGFKLIE VSNLQESLDK IKTEHPDLII
ADIAMPEINN LQATKKMRSQ VEFANLVIIA SSASVSEYTR QQSQEAGYDD FLAKPVKVEE
LFNMLQTYLS LKWIYSLNDD SSAKISTTEE IIFPPPTELF NLYQAAKAGY VVGIQEEIIR
IQQLDKRYTR FAVKVSELIA EFEDEAIVAM IQPHLSY
|
|---|
| |