| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2082 |
|---|
| Symbol | trpA |
|---|
| ID | 3680555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 2572862 |
|---|
| End bp | 2573662 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637717427 |
|---|
| Product | tryptophan synthase subunit alpha |
|---|
| Protein accession | YP_322599 |
|---|
| Protein GI | 75908303 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00116682 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000211332 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAA TTTCCGATCG CTTTGAAACC CTCAAACAGA ATCAAGAGTG TGCGCTGATT
CCGTTTATTA CTGCTGGTGA TCCTGATTTA GAAACTACGG CTGCCGCCTT AAAGATTTTA
GATAGTAATG GTGCTGACAT AATTGAATTA GGCATTCCTT ACTCCGATCC TTTGGCAGAT
GGGCCAGTAA TTCAAGCAGC CGCTACTCGT GCTTTACAAA ATGGCACAAA ACTGGAAAGT
GTGCTGGAAA TGTTAAAAGT CACCACACCC AGTTTGCAAG CACCGATTGT TTTATTTACT
TATTACAATT CTATTCTGCA CCGAGGGATT GACAATTTCC TTGAGCAAGT TGCTGCTGCT
GGTGTCGCCG GCTTGGTAGT ACCGGATTTA CCCTTAGAAG AAGCCGCAGG ACTACTTAAA
CCCGCTACTG AACGGGGGAT TGATTTAATT CTGTTGATTG CCCCTACAAG TTCATCTGAG
AGAATAGAAG CGATCGCTCG TTCATCACAA GGATTTATCT ATTTGGTTAG TGTCACAGGT
GTTACCGGGA TGCGATCGCA AGTAGAAGGG CGTGTGCTTG ATTTATTACA AAAAGTTCGG
CAAGTAACCG ATAAACCCCT CGGTGTTGGT TTTGGCATAT CTCAACCCGC ACAAGCAACT
CAGGTGAGAG ATTGGGGAGC AGATGCCGCT ATTGTGGGTA GCGCTTTTGT CCAACGCCTA
GCCACAGGAA CACCAGCAGA AGGACTCAGT GCGATCGCGG AATTTTGTCA AAGTCTGAAG
GCAGCCATCA AAACATCTTG A
|
|---|
| Protein sequence | MTAISDRFET LKQNQECALI PFITAGDPDL ETTAAALKIL DSNGADIIEL GIPYSDPLAD
GPVIQAAATR ALQNGTKLES VLEMLKVTTP SLQAPIVLFT YYNSILHRGI DNFLEQVAAA
GVAGLVVPDL PLEEAAGLLK PATERGIDLI LLIAPTSSSE RIEAIARSSQ GFIYLVSVTG
VTGMRSQVEG RVLDLLQKVR QVTDKPLGVG FGISQPAQAT QVRDWGADAA IVGSAFVQRL
ATGTPAEGLS AIAEFCQSLK AAIKTS
|
|---|
| |