Gene Ava_2027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_2027 
Symbol 
ID3680968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp2509590 
End bp2510795 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content35% 
IMG OID637717372 
Productperiplasmic sensor Signal transduction histidine kinase 
Protein accessionYP_322544 
Protein GI75908248 
COG category[T] Signal transduction mechanisms 
COG ID[COG4585] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.109719 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.72788 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTCAAT ATATTAAAGT TCATAACCAC CCTTTCCGCT TTTTACTATA TCTAGAATGG 
ATATTGTTGG CAATATCTAT TATCACATCG ATATTGCCCT ATCCCTCACC TAGATTTTCC
AGTAGGTTTC CAGAAATTAC GATTATTAGT CTCACAATTT TTGGATTAAT GGGACTAAGA
TTACCTACTA GTAATAACCT AAATAAAATA GTTTATACTG CCTGTGAAAT AATTTTAATT
TTCATTACTG GACTATTTGA AGGGAGAGCA GCTCGAATGT TTCCCTTTCT CTACATCATT
TTAGTGACTC GTAGTTGTTT AATCTTTAAG TTACCTGGAC GGTTATCTGT CACTTTGATT
TCGTTTAGTT TGTTTTTATT CACCTTAATA AATCGATTAC CTCGTCCTCC ACTTCCACTA
CAAGCTCAAG AGCGTTTTCG CTTTTTCACG CTGAGTTTGA CACTTGTATT TGGCTTAAGC
TTAATTTTCG TCTTGCTGTT AATGAATAGC TTATTATCAG AACGTCAGAG TCGAGAAGAA
CTAGCCGTTG CGAATGAAAA ACTACGTCAA TATGCTCTAC GTATTGAAAA CCAAGCAACT
CTAGAAGAAC GCAATCGCAT TGCGCGGGAA ATTCACGACT CTTTAGGTCA TTCGCTCACA
GCATTGAATT TACAATTAGA AACTGCGCTA AAACTTGCAC AGTCTAATCC CAATAAAGCA
CAAACTTTTT TAGTTAGGGC AAAAGAGCTT GGTTCTAAAG CTTTACAAGA TGTGAGAAAT
TCTGTTTCTA CTATGCGATC TCATCCATTG CAGGACAAAA CTTTAGAGCA AGCAATAGAT
ATCATAGCAG AAGACTTTCA ACAGAATACC GGGATTATAT TAACTAGTAG TTTTAATCTT
GATTATAAAT TATCAACAGA AGTTAGTACA GCCATATATA GGATCATTCA AGAATCTTTA
ACTAATATTT CTAAGCACGC CAGAGCCACA GAAGTTATTT TAGAAATTTC TCTCAATCGA
GGTAGCTTAT CTTTGATAAT TCGGGATAAT GGTAGAGGGT TTGATATACA ACAAAATACT
ACAGGTTTTG GATTACAAAG TATGCGCGAT CGCACTTTGG CTTTAGGAGG AAAATTTGCC
ATCAATAGCG ATGTTGGTTA TGGTTGTCAA ATTACAGTTG ATATTCCTGC AAGCAGATTA
ATATGA
 
Protein sequence
MGQYIKVHNH PFRFLLYLEW ILLAISIITS ILPYPSPRFS SRFPEITIIS LTIFGLMGLR 
LPTSNNLNKI VYTACEIILI FITGLFEGRA ARMFPFLYII LVTRSCLIFK LPGRLSVTLI
SFSLFLFTLI NRLPRPPLPL QAQERFRFFT LSLTLVFGLS LIFVLLLMNS LLSERQSREE
LAVANEKLRQ YALRIENQAT LEERNRIARE IHDSLGHSLT ALNLQLETAL KLAQSNPNKA
QTFLVRAKEL GSKALQDVRN SVSTMRSHPL QDKTLEQAID IIAEDFQQNT GIILTSSFNL
DYKLSTEVST AIYRIIQESL TNISKHARAT EVILEISLNR GSLSLIIRDN GRGFDIQQNT
TGFGLQSMRD RTLALGGKFA INSDVGYGCQ ITVDIPASRL I