| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1980 |
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| Symbol | |
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| ID | 3681543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 2454971 |
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| End bp | 2460676 |
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| Gene Length | 5706 bp |
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| Protein Length | 1901 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637717321 |
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| Product | Serine/threonine protein kinase and Signal transduction histidine kinase (STHK) with GAF sensor |
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| Protein accession | YP_322497 |
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| Protein GI | 75908201 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0515] Serine/threonine protein kinase
[COG3899] Predicted ATPase
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0349147 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.535824 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAGTAT TGTCCGATCC AATATTTCCC CTTTCTGGAT ATCGCATTAC AGAACAACTT
TATTTTGGTA GCAAAACCAT AGTTTATCGA GGTCTTAGAA AACAAGACCA GAAACCCGTA
GTCATCAAAT TGATGCGGAA TGAGTACCCA ACTTTCCAAG AAATTGCTCA GTTTCGTAAC
CAGTATACAA TCACCAAAGA TTTGGACATT CCAGGGATTG TGAAACCCCT GAGCTTAGAG
ACTTATCGTA ACAGCTATGC TCTAGTGATG GAGGACTTTG GCGGCCTATC ACTTAAGGAC
TGGGGGCAAA TTAGCAAAGA TAGTAACGAA TATGGCACAG TTCTCAAAAG ATTTTTTCAC
ATTGCTATAG CGATCGCATC TACTTTAGAA AGTCTACATC GTAGTCGCAT TATTCATAAA
GATATCAAAC CTGCCAACAT CCTGATTAAC CCTACTACAC TGGAAATCAG GGTTACTGAC
TTTAGTATCG CTACTCTCCT ACCAAGAGAA GTCCAAGTTC TCACAAATCA CAATGTTTTA
GAAGGGACGC TAGCTTATTT ATCTCCTGAA CAAACAGGTA GGATGAACAG GGGAATCGAT
TACCGCAGTG ATTTCTATTC TTTGGGTGTC ACTTTTTTTG AACTCCTAAC CGGACAGTTA
CCCTTCATGA CTATTGAGCC GATGGAGTTA GTCTACTGCC ACATTGCCAA GCAACCACCA
AAAGCAAGCG ACATCAACCC TAAGATTCCC ACAATTTTGT CTGATATTGT CAGCAAGCTG
ATGGCGAAAA ATGCCGAAGA CCGTTATCAG AGTGCTTACG GACTCGCATA CGACTTAGAA
ATTTGCCATA AACAGTGGCA GGAAACAGGT AACATCACAT CCTTTGAGTT AGCAACGAAG
GATGTCTCAG ATCGTTTTCT CATTCCCGAA AAGCTGTATG GTCGTCAACA TGAAGTGGCA
ACTTTACTTG CTGCCTTTGA GCGGGCAACA CAAGGAACGA CAGAAATGAT CTTAGTTACT
GGATTCTCTG GCATCGGTAA AACTGCTGTA GTTAACGAAG TCCATAAGCC CATTGTTCGA
CAACAAAGTT ACTTTATTAA AGGAAAATTT GATCAGTTTC AACGAGATAT TCCTTTATCG
GGCTTAGTAC AAGCTTTTAG AGATTTAATT GGGCAAATAC TTTTAGAAAC TGATGCTCAA
ATTCAACGTT GGCGAAGCAA AATTCTATCG GCGTTAGGTG AACAAGCTCA AGTAATTATT
GATGTAATTC CTGAACTTGC AGAAGTCATT GGTCAGCAGT CAGAGGTCAG CGAACTTTCG
GGTAGTTCTG CTCAAAATCG ATTTAATTTG TTATTTCAAC GATTTATCCA AGTATTTAGT
AGTAAACACC ATCCTCTAGT TATTTTTCTG GATGATTTGC AATGGGCAGA TACGGCTTCT
TTAAAATTCA TCCAGTTATT GATGAATCAA ACAAATTTAC TGAATAAAAA TCCTGCCGCG
CCTCCTGTGG AAACCAAAGA GAATCTCTGG ATTCCTGTTT TTAATGGAGA ACCTTGGACG
GGTTCTGAGT TACAGAGAAA TAATGAAGAA GAGCATAGCT TATTTCTCAT TGGTGCATAC
CGTGATAATG AAGTCTCTCA AGCACATCCA CTATCTTTGA CAATCAAAGA GATTGAAAAA
GTGCGGGGTA ATATTACACG TATTTCCTTA TCACCTTTAA ATCAAACTAA TTTAAACGCT
TTAATTTCTG ATACGCTACG TTGCCAAGAG GAAATAACTA TTCCTCTCAG CCAAATGGTG
TTTGTAAAAA CACAAGGTAA TCCTTTTTTT GCTACTCAAT TTATTAAATC TTTACATCAA
GATGGCGTAA TTAAGTTTAA TTTTGATGTT GCCTATTGGC AATATGATAT TGCTAAAATT
CAAGAATTAT CTCTGACAGA CGATGTCGTA GAATTCATGG GTCAGCAAAT CGAAAAGTTG
CCCACAACGA CACAAAACAT ATTAAAATTA GCAGCCTGTA TTGGTAATGA GTTTGATTTG
AAAACTCTGG CGATTGCTCA TGAGAAATCA GTGTCAGGTA CAGCATCTGA CTTATGGGCA
GCATTACATG AGGGCATAAT TCTACCTCAG ACAGAGCTTT ATAAATTCTT CCAAGAAGAT
AATAATTCAG TAGCGATTTT TGGGAATAAG AAACCTTATA AATCACGAAT AAATCATTGC
CGCCAAGTTC CCACATACAA GTTTATTCAT GACAGGGTAC AACAAGCCGC TTATTCTTTA
ATCCCGGAGC AACTGAGAAA ACAAATTCAC TTAAAAATTG GATTGTTGCT TTTAGATAAA
ATCCCCGTCG CTGAAAGAGA AGACAAAGTT TTTCAACTGG TAAATCAGTT AAATGTTGCA
GTGGAGTTAA TCACGCATCA AAGCAAGCGT GATGAATTAG CCCAGATGAA TCTAATTGCT
GGACGTAAAG CTTTAGCATC AACAGCTTAT ACAGCAGCAA TTAAATATTT AACGACGGGA
ATTGAACTAC TGGCAGGCGA TAGCTGGGAG AATCAATATC AACTCACTTT AGCTTTGTAT
GAAACAGCAG CAGAAGCAGC CTACCTAGCT GGCAATTTTG AGCGAATGGA ATCTTTGATT
CAAGTAGTCT TATTACAAGC TAAAACACTG CTTGAACAAG TAAAAATTTA TGAAATAAAA
ATTCAGGCTT ATGGAGCGCA GAATCAAGCG ATTGAAGCTG TCAATACTGC ATTGACATTT
TTAAAATTAT TAGGAGTAGA GTTTCCAGAA AATCCCAGCC AGTCAGATTT TCAATTAGCA
ATGGCAGGGA TTACAACAAA TCTCAATGGA AAGCTAATTG AAAATTTAAT TAATCTCCCA
GAAATGAGAG ATAAAAAATC ACTAGCCGCA ATCCAAATAT TATCTAGTGC ATCTGGTTTA
GTATATCAAG CTGTTCCTCA ACTGTTTCCA CTGATTGTTT TAAAACAAGT TGAACTATCT
CTTAAAGATG GAAATGCTCA TTTATCAGCT TATGCTTATG TTCTTTATGG ATTAATGCTT
TGTGGCATTA TAGGGGATAT AGAATCTGGT TATCAATTTG GCAAACTGGC ATTACGACTA
ACAGATAAAT TCAATTCTGA AGAATTGAAA GCTAAAATAA CAGAAATTTT CTACGCTACT
ATCAGCCATT GGAAAGAGCA TACCAAAGAA ATACTATCTC CTTTATTAGA AGGTTACTCT
GCTGCATTAC AAACGGGAGA TTTGGAATTT GCCAGCTATT GTCTCTATAC CCATTCTTAT
GCTTCCTATT TTATAGGAAC AGAACTAACA GGATTAGCAT CTGAAATGGC AAGTTATAGT
CATGCAATAT CACAAATTAA GCAAGAAAGG GTATTTAATT GGCACGCTAT TTATAGGCAA
ACAGTTTTGA ATTTAATACA AGCCAATGAA AATCCCTGTG ATTTAATTGG TGAGGCATAT
AATGAGAAAA TTATGCGTCA TGTTCACCAG ATATCCAATG ATGGAACTGG TCTTGTATAT
TTACATTTTA ATAAACTATT TTTATGCTAT GTATTTGGTG AATTTAAGCA AGCGATTAAA
AATTCTTACA TAGCAGAAAA TTATTTAGAA AGTGGAGTCG GAAATCATGT TTTTTCTCTT
TTCTATTTTT ATGATTCACT AGCAAGATTA GCCGTATACA ATAATCTAAT AGAAAGTGAA
AAAAAGGAAG TATTAGATAA GGTACAAGCT AATCAAAATA AAATACAACA TTGGGTGAAA
TATGCCCCCA TGAATTATCT GCATAAATTT TATTTAGTAG AAGCTGAGCA ATATCGTGTA
AAAGAGAAGT ATCTTGAAGC AATAGATTAT TATGATCGCT CTATATACCT TGCCAAAGAA
AATGAATACA TTAATGAAGA AGCTTTAGCT AATGAACTTG CTGCCAGATT CTATCTTCAA
TGGGGCAAAG AAAAAATAGC CCAGACTTAT CTCACTGATG CCTACTATGG CTACAGTCGT
TGGGGAGCAA AAGCAAAAGT TGATGATTTA GCAAAACATT ATCCCCAATT ACTTGCGCCC
ATACTCCAAC AAGAAAAATT GACCTTGCAA GCCAGTGATA GAATTACGTC TGCTACTTAT
CAATCTATAC CAGATAGGAG TATCCAGCAG ACAGTAATTG GTTCTAAAAC CAGTATTTCT
GACTCTTTAG ATTTAGCATC TGTCATTAAA GCTTCTCAAG CTCTCTCCGG GGAAATTGAG
TTGGAACAAT TACTTTCCAC CTTGATGCAG GTTGTCATGG AGAATGCCGG CGCTTCTAAA
TCAGCGTTGA TTTTGACTGC ATCAGATACT TCAGAATTAG TAGTTACTAC AGTGAGTCAC
AGTACCAATT CTGCTTCTGT CTTCACATCG TTTCCTGCAA ACATTTTAGA TTCTAGTTTC
GAGCTTCCTG TGAGCTTGAT TAAGTATGTC AAACGTAATG GAGAAATCTT TGTTATCGAT
AATGCCAAGA CTGTTGATTT CTTAGCTAGC GATCGCTACA TTCTTCGTGA GCAACCCAAG
AGTCTATTAT GTATACCTAT TATCAATCAG GGTAAATTAT TAGGCATTCT TTATCTAGAG
AATAATCTGA CAACAGGAGC ATTTACACGG GATCGCGTAG AGGTTCTGAA ACTACTCACG
ACTCAAGCAG CAATCTCCAT AGAGAATGCT ATGCTTTACA AAAATTTAGC ACAAGCTAAT
CAAAACCTAG AAGATTACAA CCATCGATTA GAAGAAAAAG TAGAAGCTAG AACACAGGAA
CTCAATGATA AAAATCACTG CTTACAGCAA ACTCTCCAAG AATTACAACG CACACAAACT
CAATTAATTC AAAGTGAGAA AATGTCCTCT TTAGGGCAAA TGATAGCGGG TATTGCCCAT
GAAATTAATA ACCCCATTAA TTTTATTCAC GGCAATATTG CCCATGCTAG TGAGTATGTA
CAAGACTTAC TCAATTTAGT TACTATCTAT CAAAGAGAAT GCCCTAATTA TTCTGATATT
CTTGCAGAGG AATATGCACA AATTGATATA GATTTCTTAG CAGAAGATTT GCCAAAAATT
CTTAACTCTA TGAGAGTTGG AAGTTCGCGC ATTCGTAACA TCGTTCTGAG TTTACGTAAT
TTCTCTCGGT TAGATGAATC AGACATGAAG CCTGTAGATA TTCATGAAGG CATTGATAAC
ACCTTGATGA TTTTGCATCA CAGACTTAAA GAGAATAGCG AACGCCCTGA AATTACACTT
ATCAAAGAAT ATGCACAATT ACCACTTGTG AATTGTTACG CTGGTCAACT CAACCAAGTA
TTTATGAATA TTATCAGTAA TGCGATCGAT GCTTTAGAGG AATCAGTCGT CAGTCGTCAG
TTGTCAATTG GTAAAACAAA TGACATGGAC AACATGACAA CTGCTCATCC TACTATTCGT
ATTTGCACGG AACTACTAGG TTCAACTACC TTACGAATTC GCATTGCTGA TAATGGTTTT
GGGATGACTG AAGCAGTGCA GCAGAAAATC TTTGATCCCT TTTACACCAC TAAGCCAGTA
GGCAGTGGTA CAGGGCTAGG ATTATCTATT AGTTATCAAG TAGTCGTGGA AAAACACAAG
GGTCAGTTAA CCTGTTATTC AGCCTTAGGG CAGGGTACTG AATTTGTTAT TGAGATTCCT
ATCTAA
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| Protein sequence | MIVLSDPIFP LSGYRITEQL YFGSKTIVYR GLRKQDQKPV VIKLMRNEYP TFQEIAQFRN
QYTITKDLDI PGIVKPLSLE TYRNSYALVM EDFGGLSLKD WGQISKDSNE YGTVLKRFFH
IAIAIASTLE SLHRSRIIHK DIKPANILIN PTTLEIRVTD FSIATLLPRE VQVLTNHNVL
EGTLAYLSPE QTGRMNRGID YRSDFYSLGV TFFELLTGQL PFMTIEPMEL VYCHIAKQPP
KASDINPKIP TILSDIVSKL MAKNAEDRYQ SAYGLAYDLE ICHKQWQETG NITSFELATK
DVSDRFLIPE KLYGRQHEVA TLLAAFERAT QGTTEMILVT GFSGIGKTAV VNEVHKPIVR
QQSYFIKGKF DQFQRDIPLS GLVQAFRDLI GQILLETDAQ IQRWRSKILS ALGEQAQVII
DVIPELAEVI GQQSEVSELS GSSAQNRFNL LFQRFIQVFS SKHHPLVIFL DDLQWADTAS
LKFIQLLMNQ TNLLNKNPAA PPVETKENLW IPVFNGEPWT GSELQRNNEE EHSLFLIGAY
RDNEVSQAHP LSLTIKEIEK VRGNITRISL SPLNQTNLNA LISDTLRCQE EITIPLSQMV
FVKTQGNPFF ATQFIKSLHQ DGVIKFNFDV AYWQYDIAKI QELSLTDDVV EFMGQQIEKL
PTTTQNILKL AACIGNEFDL KTLAIAHEKS VSGTASDLWA ALHEGIILPQ TELYKFFQED
NNSVAIFGNK KPYKSRINHC RQVPTYKFIH DRVQQAAYSL IPEQLRKQIH LKIGLLLLDK
IPVAEREDKV FQLVNQLNVA VELITHQSKR DELAQMNLIA GRKALASTAY TAAIKYLTTG
IELLAGDSWE NQYQLTLALY ETAAEAAYLA GNFERMESLI QVVLLQAKTL LEQVKIYEIK
IQAYGAQNQA IEAVNTALTF LKLLGVEFPE NPSQSDFQLA MAGITTNLNG KLIENLINLP
EMRDKKSLAA IQILSSASGL VYQAVPQLFP LIVLKQVELS LKDGNAHLSA YAYVLYGLML
CGIIGDIESG YQFGKLALRL TDKFNSEELK AKITEIFYAT ISHWKEHTKE ILSPLLEGYS
AALQTGDLEF ASYCLYTHSY ASYFIGTELT GLASEMASYS HAISQIKQER VFNWHAIYRQ
TVLNLIQANE NPCDLIGEAY NEKIMRHVHQ ISNDGTGLVY LHFNKLFLCY VFGEFKQAIK
NSYIAENYLE SGVGNHVFSL FYFYDSLARL AVYNNLIESE KKEVLDKVQA NQNKIQHWVK
YAPMNYLHKF YLVEAEQYRV KEKYLEAIDY YDRSIYLAKE NEYINEEALA NELAARFYLQ
WGKEKIAQTY LTDAYYGYSR WGAKAKVDDL AKHYPQLLAP ILQQEKLTLQ ASDRITSATY
QSIPDRSIQQ TVIGSKTSIS DSLDLASVIK ASQALSGEIE LEQLLSTLMQ VVMENAGASK
SALILTASDT SELVVTTVSH STNSASVFTS FPANILDSSF ELPVSLIKYV KRNGEIFVID
NAKTVDFLAS DRYILREQPK SLLCIPIINQ GKLLGILYLE NNLTTGAFTR DRVEVLKLLT
TQAAISIENA MLYKNLAQAN QNLEDYNHRL EEKVEARTQE LNDKNHCLQQ TLQELQRTQT
QLIQSEKMSS LGQMIAGIAH EINNPINFIH GNIAHASEYV QDLLNLVTIY QRECPNYSDI
LAEEYAQIDI DFLAEDLPKI LNSMRVGSSR IRNIVLSLRN FSRLDESDMK PVDIHEGIDN
TLMILHHRLK ENSERPEITL IKEYAQLPLV NCYAGQLNQV FMNIISNAID ALEESVVSRQ
LSIGKTNDMD NMTTAHPTIR ICTELLGSTT LRIRIADNGF GMTEAVQQKI FDPFYTTKPV
GSGTGLGLSI SYQVVVEKHK GQLTCYSALG QGTEFVIEIP I
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