Gene Ava_1962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1962 
Symbol 
ID3681622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand+ 
Start bp2438375 
End bp2439010 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content46% 
IMG OID637717303 
Productthymidylate kinase 
Protein accessionYP_322479 
Protein GI75908183 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0125] Thymidylate kinase 
TIGRFAM ID[TIGR00041] thymidylate kinase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0101939 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.909912 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTGGCA GATTCATTGT ATTTGAAGGG GTTGAAGGTT GCGGCAAAAC TAGCCAAATG 
CAGCTTTGTG CAGAGTGGTT GCAAAATTTG GGAATTTCTG TGATTCTCAC CCGTGAACCA 
GGAGGAACAG AATTAGGTGT AGATTTGCGG CGCTTGTTGT TACAGAAGGC GGAAGATAAG 
CCAATCGCTG AGGTGACAGA GTTATTATTA TATGCTGCCG ATCGCGCACA ACACGTTGCC 
CAAGAACTCA AACCTAAGTT AGCTCAGGGT AAGTATATAT TATGCGATCG CTATGTTGAC 
TCTACTATTG CCTACCAAGG TTACGGTCGC AATTTGGACA TGAATCTCAT CCATCAGTTA 
AATGACATCG CCACTGGTGG GTTAACCAGT GACATCACCA TCTGGCTAGA TGTGGATGTT 
GAAGTCGGAC TAGCCCGAAA ACGGGGGGAA AATGTAGGAC TAGACCGGAT TGAACAAGAA 
ACCATCGCTT TCCACCGCCG TGTACAGCAA GGCTATGCAA ACTTAGCTGC ATCCTCTCCC 
TCGCGCATCA TCAGGGTTGA TGGTCAATTG AGTAAAGAAA CTGTACATAA AACCATTCAG 
GAGATTCTCA GCCCACATCT AAAGGAATGG CTGTAG
 
Protein sequence
MGGRFIVFEG VEGCGKTSQM QLCAEWLQNL GISVILTREP GGTELGVDLR RLLLQKAEDK 
PIAEVTELLL YAADRAQHVA QELKPKLAQG KYILCDRYVD STIAYQGYGR NLDMNLIHQL 
NDIATGGLTS DITIWLDVDV EVGLARKRGE NVGLDRIEQE TIAFHRRVQQ GYANLAASSP 
SRIIRVDGQL SKETVHKTIQ EILSPHLKEW L