| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1905 |
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| Symbol | |
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| ID | 3681779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 2366836 |
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| End bp | 2367819 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637717246 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_322422 |
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| Protein GI | 75908126 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000000225231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0162266 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTACTG TTAACACCCA CACAGAAGAC ACAAATACCA AATTCACGGC TGATATGGTG
CGAACCTATC TGCGCGAAAT TGGTCGTGTA CCCCTGCTCA CCCGTGAGCA AGAGATTGTT
TACGGGAAGC AGGTGCAGCA AATGATGTCG CTGATTGACG CTAAAGAGGC TTTAGCGAAA
AAATTGGATC GAGAACCGAG TTTACCAGAG TGGGCTGACC ACGTTCAAAA GTCTGAAACA
GAGGTGAAAC AGACTGTAAC TCAGGGTAAG CGAGCCAAGC AAAAAATGAT TGAAGCGAAC
CTGCGTTTGG TAGTGGCGAT TGCCAAGAAA TACCAAAAGC GGAACATGGA GTTCCTAGAT
TTAATCCAAG AAGGAACTCT AGGACTAGAA AGAGGCGTAG AGAAGTTTGA CCCGATGAGG
GGTTACAAAT TCTCAACCTA CGCTTACTGG TGGATTCGCC AAGCGATTAC CCGTGCGATC
GCTCAACAAG GTCGTACCAT CAGGTTACCT ATCCATATTA CCGAGAAACT AAACAAAATC
AAAAAAGTTC AACGCGAACT AGCTCAAACC TTGGGGCGTT CTCCTTCACC GGCAGAAATC
GCCAAAGAAC TAGAACTAGA ACCTGCTCAG ATTCGTGAGT ATCTGAACAT GGCGCGTCAA
CCAGTTTCTC TCGATGTGAA AGTTGGTGAC AACCAGGATA CAGAACTGCA AGAAATGCTC
GAAGATGAAG GCCCATCACC AGAGTATTAC ACCACTCAAG AATTCTTGCG CCAAGACTTG
AATACTCTCT TGGCAGAACT CACACCCCAA CAGCGAGAAG TCGTAGCCTT GCGCTTTGGC
TTACTAGACG GTAACGAATT GTCCTTGGCG AAAGTCGGTG AACGATTGAA CCTCAGTCGT
GAACGCGTCC GCCAATTAGA ACATCAAGCA CTAGCTCATC TGCGTCGCCG TCGAGCCAAT
GTCAAAGAAT ACGTCGCCAG CTAA
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| Protein sequence | MPTVNTHTED TNTKFTADMV RTYLREIGRV PLLTREQEIV YGKQVQQMMS LIDAKEALAK
KLDREPSLPE WADHVQKSET EVKQTVTQGK RAKQKMIEAN LRLVVAIAKK YQKRNMEFLD
LIQEGTLGLE RGVEKFDPMR GYKFSTYAYW WIRQAITRAI AQQGRTIRLP IHITEKLNKI
KKVQRELAQT LGRSPSPAEI AKELELEPAQ IREYLNMARQ PVSLDVKVGD NQDTELQEML
EDEGPSPEYY TTQEFLRQDL NTLLAELTPQ QREVVALRFG LLDGNELSLA KVGERLNLSR
ERVRQLEHQA LAHLRRRRAN VKEYVAS
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