| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1781 |
|---|
| Symbol | |
|---|
| ID | 3682065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 2221328 |
|---|
| End bp | 2222491 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637717121 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_322298 |
|---|
| Protein GI | 75908002 |
|---|
| COG category | [A] RNA processing and modification |
|---|
| COG ID | [COG5178] U5 snRNP spliceosome subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0106745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.634764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTGA ACCTTATCCC ATTATTTTCC CTTGGATTAT GCGGGGTGAT GGTATTGATT
TCGCCACCTC AGGTGAATGC CAATACTCCC TTAAATCGTG CTGAGGTTCA GAGCATTCGT
AACTTTGTGC AATTAATTCA AAGAGCATCT AGAAATAAAC GTCCAGCACA GAAATTGGAT
GCAATTATTC CAGGGGATGG ACTATCAACT GGTCGAGCTT CTTTAGCAGA CTTGCGTTTC
AACGACGGTT CTCTGGCAAG GGTTGGAGAA CAAGCAGTAT TTCAATTTAT GCCCAGGACG
CGGAATTTTC GATTGTCTAA TGGGACAGTA TTACTACTAA TTCCACCAGG AAGAGGACAA
ACACGTATTC AAACACCAAG CGCAACAGCC GCCATTCGTG GTTCGGCGCT ATTCATTCGT
TATGACCAAA AAACGGATAC GACGATTATT GGTGCGCTGA CAAATAGTGG GATAGCAGTG
TCTAACAAGG ACGCATCTCA AACTCAACCG CTAAAAGCAG GACAACTTTT AGTTCTTGTC
AAAGGTGAAA TTCAGAGTTT ATATGATTTT GATCTACAAA ATTTTTATGA AACAAGTGAT
TTGGCTGAGG GTTTAGATTT AACTGGCAAA AACTCTTCAG CAACACCAGA CCCAGCTATT
GCGGGTGTCA GAGCAGAAAT TATGGCCGCG TTGGCAACAC AGTCACCTCT CGTTGGTAAA
GGGGTGATGG AAAACCCAGC TTTTTTAGAA CTAAGTACTA CTTCCTCTGA GGTAATAGAT
GAAGATACTG ACGAAGATGA TTTCATAACC GATAATTTTC TGGTTGATTC ATTAGTAGAA
ACAGGAGAAA TTTTGTTCCA AAATGCTCAA CAACTTGGGG ATAATGCTGA TGGCAATCTA
AATAATATCA ATAATATACA ACCAGACCCG CCTCTACCCG ACAACCCAGA CCCACCGCCA
CCACCACCAG ACCCACCGCC ACCACCACCA CCAGACCCAC CACCGCCACC ACCACCAGAC
CCACCACCGC CACCACCACC AGACCCACCA CCACCACCAC CACCAGACCC ACCACCACCA
CCACCACCAG ACCCACCACC GCCACCACCA CCAGACCCAC CACCGCCACC ACCACCAGAC
CCACCACCAC CACCACCGCC CTAA
|
|---|
| Protein sequence | MRLNLIPLFS LGLCGVMVLI SPPQVNANTP LNRAEVQSIR NFVQLIQRAS RNKRPAQKLD
AIIPGDGLST GRASLADLRF NDGSLARVGE QAVFQFMPRT RNFRLSNGTV LLLIPPGRGQ
TRIQTPSATA AIRGSALFIR YDQKTDTTII GALTNSGIAV SNKDASQTQP LKAGQLLVLV
KGEIQSLYDF DLQNFYETSD LAEGLDLTGK NSSATPDPAI AGVRAEIMAA LATQSPLVGK
GVMENPAFLE LSTTSSEVID EDTDEDDFIT DNFLVDSLVE TGEILFQNAQ QLGDNADGNL
NNINNIQPDP PLPDNPDPPP PPPDPPPPPP PDPPPPPPPD PPPPPPPDPP PPPPPDPPPP
PPPDPPPPPP PDPPPPPPPD PPPPPPP
|
|---|
| |