Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_1678 |
Symbol | |
ID | 3682234 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 2104388 |
End bp | 2105110 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637717017 |
Product | TPR repeat-containing protein |
Protein accession | YP_322195 |
Protein GI | 75907899 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACCAA AAACATATAG ATTCATCGTA CCAAGCTGCT TAGGAATTTC AACCATACTG ATGTTACTAA ACACAGGTGT AAATCAAAAA GCGATCGCCA ATACTTCCTC ACAGAATATA TCTCCGGTAA TCGTTTCCCA GGCTCAAACA ACGACTGACC CGTTGGTAGA ACTGGGCATT ACAAGGCAAG AACTCGAAAA AGCTCTTGCT GAATCCGATG AAGCGATTAA GCTCAATCCT AATGATGTAG ATGCTTATTT AGGTCGGGCA ATGATTCGTC ATTTCTCAAA AGACTACGCA GGTGCAATTT CTGATTACGA GCAAGCTATC AAACTCCGAC CACGACCAAA GGACGTTTCT GTATATTCCA ATAGCGGCAA AGCTCACGCT GAATTAGGCG ACCACAAAAG TGCGATCGCA AAATATAACA CAGCCCTCAA AATCGATCCA AATGGAGTTT TTAGTTTATT TATCTACAAT GATAGGGGTC TTTCCTATCT GGCTTTAGGG GATACTAAAA GTGCGATCGC AGACTTTAAT CAAGCAATTC AACTCGCTCC TGAATCCGCA GACTCCTACT ATAATCGAGG TCTTGCTCAA CGTCGTTTAG GTCAAAAGCA AGCCGCTATT GCTGATTTTC AAAAAGCAGC AAAATTCTAT CAAGCAAATA ACAAAACTGA GGAATATAAA AGGACTTTGA AGCAATTAGA AGAGCTTCAG TAA
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Protein sequence | MIPKTYRFIV PSCLGISTIL MLLNTGVNQK AIANTSSQNI SPVIVSQAQT TTDPLVELGI TRQELEKALA ESDEAIKLNP NDVDAYLGRA MIRHFSKDYA GAISDYEQAI KLRPRPKDVS VYSNSGKAHA ELGDHKSAIA KYNTALKIDP NGVFSLFIYN DRGLSYLALG DTKSAIADFN QAIQLAPESA DSYYNRGLAQ RRLGQKQAAI ADFQKAAKFY QANNKTEEYK RTLKQLEELQ
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