Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_1672 |
Symbol | |
ID | 3682228 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 2096227 |
End bp | 2098788 |
Gene Length | 2562 bp |
Protein Length | 853 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637717012 |
Product | TonB-dependent receptor |
Protein accession | YP_322190 |
Protein GI | 75907894 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0105669 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAGTGTG GGGCAGCCTT GAAACTAAAT CAGTATATCT ATCTAGGTAT AGCAAGTACG ATTTGCTTGC TGATAACCCA GAAAGCAAAT GCACAAGAGA AGCCGATAAA CACAAAGGAT ATTGGATTAA TTACAAATAT TCCTCAACTC AGTGATATTC AGCGTCCAGC AACGAGTGTT AAAGATTGGC TAGCACAGTC AGCACCAACC CCTCCACAAA TCAAGATTAC TGGTGTGCGA ATCAATCGTA CAGACGATAA TTTCGAGCTA ATTCTCGAAA CTCCAGATGG AGAAATATCT GCACCAGAAA CTCTTCAAGA AGGCAATATA TTTATTGCAG ATATCCCCAA TGCAATACTA GCTTTACCAG AAGGAAAGGT ATTTCGGGAA GACACACCAG TTGATGGTAT TTCTTATGTG ACGGTAACAC AGGAGGAATC TAACAACACG GTGCGTGTAA CGATCTCATC CCCAGGAAAT CTACCACCAA TCCAGGTGGT GAATCAATCC AATAATTTAA CGATCGCCCT TACTCCTACT CCTACTTCCC CAGACATTGA ATTGATAGTA ACCGCCCAAA AACGCCCCGA AGACGCGCAA GATGTCCCCC TTAGCTTGAC GGTAATTCCT CAACAAGAAA TCGAAGACGC TCAAATTCGT TCTTTCCAAG ATATCGCCAA CAACACACCC AACTTTAGTT TTCTCCCCAC CACTGCGGGG AGTGCTGATT TTAGTTACTA CAGTGTGCGG GGGTTAAATA ACTTTAACTT TTTAGCCAAT CAAGACACCG TTGGCTTTTA CATTGATGAT GTTCCCTTCG ATTATGGCGG CTTTTTAGAT GTTGGTTTGA TTGATTTAGA ACGGGTAGAA GTTTTGCGAG GCCCCCAAAG CACCCTCTAT GGTAGAAGTA GTCCGGCTGG GGTGGTGAAT GTAATTTCTC GCCCACCAAG TAATCAGCCA GAGATGCGAA TTAGCGCCCT TTACGGTAGC TACAACAACC GGGAATTGCA ATTATCCCTC AGTGATGCCA TTATTCCCGA TAAACTGGCA TTTCGACTAG CAGGCGCATA CAACGCACGA GATGGCGTAT TTGACAATAT CTTTCTGAAT AAGCCAATCG GAGAGCGATC GCAACTCACA GGACGCGCTC AAATTCTCTG GACACCCACA CCAGAGTGGA ATATATCGTT TAACGCCTAT GCCAGTGACA ACGATAATGG CAATCCTACC TTTTCTCGAC AAAACGCACA AAACCCTTTT CAAGTTTCCC AAGAAGTTGA TGGTTTCAAT CGCCTCAGCA CTAATACCCA GGCACTAAAA ATTAGTTACA ACGGCAATGG ATTTCGGGCT ACGTCTATTA CCAGCAGGCG ATTTAGCAAT CAAAATACCT TGGTGGGTGA CAATTTCCCC GGTGATTTGC TACAGCAAAT TATTGGTATC AATTCGACCC TGTGGTCACA GGAATTTCGC CTCCAATCCC CTGAAAGTGC CGACCGTTTG CGGTGGTTGC TTGGTGGATA TTACGAGTCA CGGAATTTTA ATGTTCTAGA TGACACCTTT AAATATACTG ATGCTGGTGC AGTAGCCTTT GGCGTACCAG CCCCAGGAAG CGATCGCGTT TCCGCAGAAC AAAATCGTCA AACCTACGCC ATATTTGGAC AAATTGACTA CAAACCAATT GCACCACTAA CTTTGTTTGC AGGTTGGCGC TATGAAACTG CTGACGCTGA ACTCGACCGT CGCCGTGTTT TTGTCAATCC TGATGGTACA GTCAATCCAC CCACCGCAGA AGTACGCAAT GCTACCCTTA ATAGTGACGC ATTTATCCCC CGCTTTGGCT TACAGTATCG CTTCAATCCC AATTTAATGG CTTACGCCAC AATAGCTAAA GGCTACAGAC CAAGTGGATT TAACTACCGT GCAGATACAG AAGATACACG CCGATTTCAA GAAGAAACCA CCTGGACTTA CGAAGTAGGC TTAAAATCTT CTTGGTTAGA TGACCGACTG AGTGCAAATC TATCTATTTT TCAAAGCGAT GTTGATAACT ACCAAGTGCT GCTGACCGAT GATTTTGGCT TTTTTAGAAA CGTTACCAAT GCAAATGTCA AAGTCACAGG TTTAGAATTT GAACTCAAAG CCAAGCCTTT ACAAGGACTA GATTTAATTG CTGGTATTGG CTACGTGGAC AGCAAATTTA AAAACTATAG AAATCCTTTC ACAAATGGAG ACTTTAGCAA TAACCGCGTT CCTTTCGCAC CGGAATTAAC CTACAATTTA GCCGTTCAAT ATCGTAGTCC CGGTGGTATT TTTGCCCGTG CAGAATTGCG CGGTTATGGA ATAACTTACT TTGATGATGC TAACCAAGTG AAGCAAGACC CCTATGCACT AGTAAATGCC CGGATTGGTT ATGAGGGCGA AAAATATGGC ATTTATCTAT ATGCAAATAA CTTGTTTGAT ACTCGTTATA TTACCTCTGG TTTCCTATTC CCACCACCTA ATGTAACTGC GGGATTTGGC GACCCGGTAA CTTATGGTGT GCGAGTAAGT GCGAGTTTTT AA
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Protein sequence | MECGAALKLN QYIYLGIAST ICLLITQKAN AQEKPINTKD IGLITNIPQL SDIQRPATSV KDWLAQSAPT PPQIKITGVR INRTDDNFEL ILETPDGEIS APETLQEGNI FIADIPNAIL ALPEGKVFRE DTPVDGISYV TVTQEESNNT VRVTISSPGN LPPIQVVNQS NNLTIALTPT PTSPDIELIV TAQKRPEDAQ DVPLSLTVIP QQEIEDAQIR SFQDIANNTP NFSFLPTTAG SADFSYYSVR GLNNFNFLAN QDTVGFYIDD VPFDYGGFLD VGLIDLERVE VLRGPQSTLY GRSSPAGVVN VISRPPSNQP EMRISALYGS YNNRELQLSL SDAIIPDKLA FRLAGAYNAR DGVFDNIFLN KPIGERSQLT GRAQILWTPT PEWNISFNAY ASDNDNGNPT FSRQNAQNPF QVSQEVDGFN RLSTNTQALK ISYNGNGFRA TSITSRRFSN QNTLVGDNFP GDLLQQIIGI NSTLWSQEFR LQSPESADRL RWLLGGYYES RNFNVLDDTF KYTDAGAVAF GVPAPGSDRV SAEQNRQTYA IFGQIDYKPI APLTLFAGWR YETADAELDR RRVFVNPDGT VNPPTAEVRN ATLNSDAFIP RFGLQYRFNP NLMAYATIAK GYRPSGFNYR ADTEDTRRFQ EETTWTYEVG LKSSWLDDRL SANLSIFQSD VDNYQVLLTD DFGFFRNVTN ANVKVTGLEF ELKAKPLQGL DLIAGIGYVD SKFKNYRNPF TNGDFSNNRV PFAPELTYNL AVQYRSPGGI FARAELRGYG ITYFDDANQV KQDPYALVNA RIGYEGEKYG IYLYANNLFD TRYITSGFLF PPPNVTAGFG DPVTYGVRVS ASF
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