| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1520 |
|---|
| Symbol | |
|---|
| ID | 3682486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 1868569 |
|---|
| End bp | 1870182 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637716860 |
|---|
| Product | Beta-lactamase |
|---|
| Protein accession | YP_322038 |
|---|
| Protein GI | 75907742 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000638983 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTCC CATCACCAAA TAAAGTCGAT GAATTATTTT CCGAATGGGA TAAACCAGGC
TCTCCTGGTT TTGCTTTAGC CATCACCAAA GATGGTGAGA CTGTCTATAA GCGCGGCTAT
GGTATCGCTG ACTTAGAACA CAACATAAAG ATTTTTCCAA ATTCGGTCTT TGATATTGCC
TCAACGTCCA AGCAGTTTAC AGCGATGTGC ATTGCTTTAC TTGCACGAAA GGGGAAACTT
TCTTTAGATG ACGAGATCCA AATCTACATT TCAGAGATAC CCAGATATGA GTATCCCATT
ACTGTGCGGC ATCTGATTCA CCACACAAGC GGCATTCGTG ATTACCTAAC CCTGATGGGG
TTGGCAGGAA TGCAATGTGA GAATGACTAT CCTGATAACG AAATCATTGG TTTAATAGCT
CGTCAAAAAG AATTGAACTT CAAGCCAGGA GAGGAGCATT TGTACAGCAA CTCAGGATAT
TTTCTTTTGG CAGAAATTGT CAAACGTGTC TCCGGAGAAT CTCTTGCGGT TTTTGCTGAT
AAGCATATTT TCAGTCCCCT TGGGATGAAG ACAACTCACT TTCACGATGA TTTCACAAGG
ATTGTCAGGA ATAGAGCGAT TGGCTACTCT GTGAGGGACG AAGGTAGCTT TCGGATTGAT
ATGTCTATTC TTGATGTAGT GGGTGACGGT GGTATCTATA CCACAGTTGA GGATCTATGT
ATCTGGGATC AGAATTTTTA CCAAAACAAA TTAGGAGGAT ATGGGCAAGA CCTGATCGAA
GAAATCATTA CACCTGGAAG ATTGAATAGC GGCGAAGTGA TAGATTATGC CTTTGGTTTA
GTTATAGGGC ATTACCGAGG ATTAGAAACC ATCAGTCACA GTGGCGGATG GATGGGTTAC
AGATCACAGA TGCTTCGATT CCCCAAACAG AGATTCTCTG TAATTTGCTT GTCAAATTTG
GGCAGCGCTG AACCACCAGA GCTTGCCAGA AAAGTCGCAG ATATTTACTT AGTTGATGAC
TTTACTGAGC AAAGCATAGA ATCTGTAAGT CGCCAAACCC AAATAAGAGA AATTCCATCG
GTTGATTTAG AGAGCAAGAC TGGCTTTTAT CAAAACCTAA AAACAGGAAC CGTTTGGGAG
TTATTGGTAA AGGATGGAAA ATTAATCGTG GAATTTGCCG GAATGAGCTT TACACTTGCT
CCTGTGAGTT CAAGTCATTT TGTCATAATG GATATTCCTT CTAATCCCGA TGTTGAATTT
GAAGAGTCAG GTTTAGATGA ACCCTCTCAT CTTTACGTTT GTGTGGATGG CAAACCACGG
GAGGTTTTCC AACGGTTGGA CTTTGCTCCT CCTGATTCTG AACAGTTGAT GGATTTTACA
GGAGAGTATT ATTGCCAAGA GTTAGATGTC ACCTACAGAA TCACTATAGA AGACGGAGAG
TTGCTGCTAA ATCGAAGAAA TTCTCTTCGA GAAACCCTCA AGCCAATTAA CAAAGATTTA
CTGGAAGGTA CGGACATCAC TTTGCAGTTT GTCCGTGATG ACTTTCATCA AGCTGTTGGA
TTCAATATGA GCGCAGGATA TGGAAGTGTC AGAAACATTC AATTTGTGAA ATAA
|
|---|
| Protein sequence | MTLPSPNKVD ELFSEWDKPG SPGFALAITK DGETVYKRGY GIADLEHNIK IFPNSVFDIA
STSKQFTAMC IALLARKGKL SLDDEIQIYI SEIPRYEYPI TVRHLIHHTS GIRDYLTLMG
LAGMQCENDY PDNEIIGLIA RQKELNFKPG EEHLYSNSGY FLLAEIVKRV SGESLAVFAD
KHIFSPLGMK TTHFHDDFTR IVRNRAIGYS VRDEGSFRID MSILDVVGDG GIYTTVEDLC
IWDQNFYQNK LGGYGQDLIE EIITPGRLNS GEVIDYAFGL VIGHYRGLET ISHSGGWMGY
RSQMLRFPKQ RFSVICLSNL GSAEPPELAR KVADIYLVDD FTEQSIESVS RQTQIREIPS
VDLESKTGFY QNLKTGTVWE LLVKDGKLIV EFAGMSFTLA PVSSSHFVIM DIPSNPDVEF
EESGLDEPSH LYVCVDGKPR EVFQRLDFAP PDSEQLMDFT GEYYCQELDV TYRITIEDGE
LLLNRRNSLR ETLKPINKDL LEGTDITLQF VRDDFHQAVG FNMSAGYGSV RNIQFVK
|
|---|
| |