| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1489 |
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| Symbol | secF |
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| ID | 3682494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | - |
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| Start bp | 1833351 |
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| End bp | 1834328 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637716829 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_322007 |
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| Protein GI | 75907711 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.921272 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACTAA GTATAAATAA ATCGCGATCG CTTTGGTGGA TTCTTTCTAG TGTCATCACC
CTGGTTGGTC TGATTTCAAT GTTGATCTCT TGGCAAAACC CTGATATTCG CGCTCCCTTA
CGTCCAAGTT TGGATTTTAT CGGTGGTACG AGATTACAGT TTGAAAGGGA CTGCACCAAA
CCAGGAAACT GCGACCAACC GATTGATATT AACGTTGTGC GGGAAGTAGC CAAAGCCCAA
GGTTTAGGTG ACAGCAGTAT TCAAATTGTC ACTGATAGAG AAACAGGCGC AGAAAACGGC
ATCTCAATCC GCACCAAAAC CTTAGAGCGT GAGGAACGGA CTAATTTACA AAATGCCTTA
AGTGAAAAAA TTGGGTCTTT TGACGAGCAG AAAAATCAGT TTGATACAGT CGGGCCTACC
TTAGGGAGAG AATTATTTAC CTCTGGGATG ATCGCCCTGA TTGTATCTTT TGCAGGCATC
GTCATTTACT TAAACTTCCG CTTCCAATTA GACTACGCCG TATTTGCCAT CATTGCCCTA
TTCCATGATG TCTTAATCAC AGCAGGCATA TTCTCAATTT TCGGTTTAGT TTTCGGTACT
GAAGTCGATA GCTTATTTAT CGTAGCTCTA CTGACAATTA CTGGTTTCTC CGTCAACGAT
ACAGTAGTAA TATACGATCG CATCCGAGAA ACCCTAAAAC TAGAACCCAA TCGCCCCATC
GCTGATATAG TCGATGATGC AGTAAACCAA ACCCTGGGAA GGTCAATTAA CACAACCTTG
ACTACCATGT TGCCACTGTT CGCAATCTAT TTATTTGGTG GCGAAACCCT AAAAAACTTT
GCTCTAGCTC TAATTTTTGG CTTCTTAGCA GGAGCTTATT CCAGTATCTT CATCGCCAGC
ACCCTACTAA CACTGTGGCG TGAACGTACC AGTTCATCTA CAGTATTACC AAACACAGAG
GTAGCTGATA CACAATAG
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| Protein sequence | MKLSINKSRS LWWILSSVIT LVGLISMLIS WQNPDIRAPL RPSLDFIGGT RLQFERDCTK
PGNCDQPIDI NVVREVAKAQ GLGDSSIQIV TDRETGAENG ISIRTKTLER EERTNLQNAL
SEKIGSFDEQ KNQFDTVGPT LGRELFTSGM IALIVSFAGI VIYLNFRFQL DYAVFAIIAL
FHDVLITAGI FSIFGLVFGT EVDSLFIVAL LTITGFSVND TVVIYDRIRE TLKLEPNRPI
ADIVDDAVNQ TLGRSINTTL TTMLPLFAIY LFGGETLKNF ALALIFGFLA GAYSSIFIAS
TLLTLWRERT SSSTVLPNTE VADTQ
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