| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1390 |
|---|
| Symbol | |
|---|
| ID | 3682684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 1714143 |
|---|
| End bp | 1717244 |
|---|
| Gene Length | 3102 bp |
|---|
| Protein Length | 1033 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637716727 |
|---|
| Product | filamentous haemagglutinin-like protein |
|---|
| Protein accession | YP_321908 |
|---|
| Protein GI | 75907612 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3210] Large exoproteins involved in heme utilization or adhesion |
|---|
| TIGRFAM ID | [TIGR01901] filamentous haemagglutinin family N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.379495 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTC ATTGCATCAA AATAGGTATC TCTATCATTT TAGGCGTAGG TGCAATAACT
GGCATTGAGC ATCCTAGCAA CGCCGAAATT ATTCAAGATA GTACACTACC TGAAAATACT
AATGTGACTG TTAATTTCGG TAAAGAGGGT GATTCTACCT TCATTATTAA TGGCGGAACA
GCAATAGGCA ACAATCTATT TCATAGTTTT AGCAAATTTT CCTTACTCAA AGGTCAAAAT
GCTTACTTTA ATAGTACTGA CAATATTCAA AATATCTTTA GTCGGGTTAC TGGTGGAGAA
GTATCAAATA TTGATGGCTT AATCACAGCT AGAAGCAGGG TTAATTTATT TCTCATTAAT
CCCAATGGAA TTATTTTTGG GCCTAATGCT CAGATAAATA TTCAGGGTTC TTTCGTTGCT
AGTACTGCTC ATAGTGTCAG ATTTGCTGAG GGTGGAGAGT TTATAGCTAA AACTGCAAGT
GTTACGCCCT TACTCAATGT CACAACTCCT ATTGGTTTAC AATATGGGGC TAATTCTGGC
AGCATTCAGT TACAAGGAGA ATCAATACAT CAGCCTAGTA GGCTGCAAGT TGAAGGCAAT
CAAACTTTAG CCTTAATTGG TGGAGATGTT ATTTTAGGAA ACGCTAATCT TAGCACTATA
AAGTCTGAAG GCAGGATAGA ACTAGGCAGT GTTGCATCAG CAAGTTTAGT GGGAATTAAA
TCAGTCAGTT CAGGCTTCTT GTTTAAATTT GACGGGGTAT CTGAATTTGG TGATATTCAA
CTATCTTCAG GCACTAATAT TAATAGTTTA GGTGACCTCA ATCTCACGGG AAAAAATATT
GTACTTCAAG ATGCGTCTTT GAATGTGTTC AATAATCTCA CAGTCAATGC CCAAGAGAGC
ATTCAGTTAA TAGATAGAAG TGCAATTGAT ACTAGAAGTT CTAATAATTC GCCAGGAAAT
CACACTATTA ATACTCGCAG ATTATTACTG AGTAATCAAT CTTTTATCGG TATAAACGGC
GGTAATCTGG AGGTGAATGC CTCAGATGTG GTGGAACTGA CAAGTGATCT CAAAGGTACT
CCCAGCCGTA TCTATGCCAC AACTTCAGAT GGTGACGCAG CCAATGGAAA TTTAACAATT
AATACTGGGG ATTTATTAGT CGAGAATGGC TCACAAATTA TCACTAATTC TTCTACTGCA
TTTTCCGGCA TTATTCCCCT TAATGTGCAG ACAAAAGCTA GTTTAACTAT TAATGCCGCA
AATTCAGTGA CTTTGCGGGG TAGTTCATTG GACGAAATAT ATTCTAGCGG TGTGTTTAGT
CAAACTGATG GTGATGGCAA GGCTGGAGAC CTGACGATTA ATACTCGTGT GTTACGAATT
GAAGACGGGG CGCAGGTCAT TGCCAGAAAT TTGAGTGTCG GTAAAGGCGG AAACTTGACT
GTAAATGCTT CTGATAAGGT GCTAATAATT GGTACTTCTC CCAAAGGTTC AATTCCTGGG
AACTGGCCTA ACGATTCAGA GCTAGATGAG CAAGTACCTA GAGCTGTCGG CCCCTTAAAA
GAGTTGTTGA TAACAGGGGT GTTACGCAGA GATAGTTTAC CTAGTGGTAT ATTTACTGAC
TCAGTTTCTT CCGGTGATGC TGGCATGATC ACGATTAACA CTGGTGAGTT AACAGCACAA
AATGGAGGGC GAATTAGTGC CGATGCTTTT TCAGCAGGTA AAGGGGGAGA TTTAATGATC
AGTGCTACTG ATAAGGTGGA ATTGATTGGT ACTGCTGTCA ATGGGGTTGC TAGTGGTTTG
TTCACGAGAA CAGGTTCTTC AGCTACGGGA AATGCCGGAT CTTTGACAAT TGTCACTGGT
AATTTATTAG TAAAAGATGG GGCGCAAGTC AGTGTTAGTA CTTTTGGTAC GGCTAAGGGT
GGCAACTTGT TGGTGCAGGC GGCTGAGGGG ATAAAACTCA TCGGTGTTTC TCAGAGGAAT
ATTGCCAGTG GTTTGTTTGC CCAAGCTAAT CGTTACGCAA CAGGAGATGC GGGTAGTTTA
AAGATTGATA CCTCGACCTT ATTGGTACGT GATGGCGCAC AAGTTAGTGC TAGCACTTTC
GGGGCAGGTA AAGGTGGAGA TTTGTTTGTC CAAGCTTCTG ATATCAAACT AATCGGTACT
GCTGCTGATG CTTCGTTCTC TAGTGGCTTG TTTACTGTAG CAACGGCAAA CTCTACTGGT
AGCGCTGGTA AACTCACGGT GAACGCGGAT GTATTGGATA TTGAGCAGGG AGCGGGAGTA
GGAGTGCAGA GTAGTGGTAA GGGGAGTGCA GGCAACTTAA ATATTAATGC TCATAGAATC
AGATTGGATG ATCAAGCTTT TATCAGTGCC GATACTCGTG ATAATGGGAG TGACCCTAAC
CGATCGCAAG CAAATATCAA TCTGCGATCG CGCAATCTCA TCCTATCTCG TGGCAGTAGC
ATCACCACTA ACGCCACAGG CAGTAATGTC ATTGGCGGCA ATATAGACAT TGATACTAAC
ACTCTAGTTG CTATTCAAAA TAGTGATATT AGTGCTAATT CTGCTGACTT TCGTGGTGGT
CGAATCAATA TCAATGCCCA AAATATTTTT GGAACCAAAT TTCGCAATCA ACGTACCCCC
AATAGCGATA TTACTGCTAC TGGTGCTAGT CCTGAGTTAA GCGGTGCAGT GGAAATTACT
ACCCCTGATG TAGACCCTAG TCAAAGTTTA AGCCAACTCC CATCAGAGGC TGTTGATGTG
TCTAATCAAA TCTCTCAAGA ATGCCGGATT GATGAAGCGA CGGCACAGAG ACAAAATCAG
TTTATTATTA CTGGACGCGG TGGTGTACCA ACAAACCCCT ATGAAACCTT AGATAACACG
GCGATAATTA CGGATTGGGT AACTGTTAAT GATGTCAATA CTGTTGCTCA CAAAGAAAAT
AATTTCGCCC AAGAGGAAAA CACTGTTGCC AATAGTATTG TTGAGGCTCA AGGCTGGGTT
TATGATACCC AAGGAAATTT GGTTCTGACT GCCGAAGCAA CTAAAATAAC AGGTCATGGT
TCAGGATTGA CAACCGATTT CTGCCAGGTA AATAAGGGAT AA
|
|---|
| Protein sequence | MSRHCIKIGI SIILGVGAIT GIEHPSNAEI IQDSTLPENT NVTVNFGKEG DSTFIINGGT
AIGNNLFHSF SKFSLLKGQN AYFNSTDNIQ NIFSRVTGGE VSNIDGLITA RSRVNLFLIN
PNGIIFGPNA QINIQGSFVA STAHSVRFAE GGEFIAKTAS VTPLLNVTTP IGLQYGANSG
SIQLQGESIH QPSRLQVEGN QTLALIGGDV ILGNANLSTI KSEGRIELGS VASASLVGIK
SVSSGFLFKF DGVSEFGDIQ LSSGTNINSL GDLNLTGKNI VLQDASLNVF NNLTVNAQES
IQLIDRSAID TRSSNNSPGN HTINTRRLLL SNQSFIGING GNLEVNASDV VELTSDLKGT
PSRIYATTSD GDAANGNLTI NTGDLLVENG SQIITNSSTA FSGIIPLNVQ TKASLTINAA
NSVTLRGSSL DEIYSSGVFS QTDGDGKAGD LTINTRVLRI EDGAQVIARN LSVGKGGNLT
VNASDKVLII GTSPKGSIPG NWPNDSELDE QVPRAVGPLK ELLITGVLRR DSLPSGIFTD
SVSSGDAGMI TINTGELTAQ NGGRISADAF SAGKGGDLMI SATDKVELIG TAVNGVASGL
FTRTGSSATG NAGSLTIVTG NLLVKDGAQV SVSTFGTAKG GNLLVQAAEG IKLIGVSQRN
IASGLFAQAN RYATGDAGSL KIDTSTLLVR DGAQVSASTF GAGKGGDLFV QASDIKLIGT
AADASFSSGL FTVATANSTG SAGKLTVNAD VLDIEQGAGV GVQSSGKGSA GNLNINAHRI
RLDDQAFISA DTRDNGSDPN RSQANINLRS RNLILSRGSS ITTNATGSNV IGGNIDIDTN
TLVAIQNSDI SANSADFRGG RININAQNIF GTKFRNQRTP NSDITATGAS PELSGAVEIT
TPDVDPSQSL SQLPSEAVDV SNQISQECRI DEATAQRQNQ FIITGRGGVP TNPYETLDNT
AIITDWVTVN DVNTVAHKEN NFAQEENTVA NSIVEAQGWV YDTQGNLVLT AEATKITGHG
SGLTTDFCQV NKG
|
|---|
| |