Gene Ava_1295 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1295 
Symbol 
ID3683038 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1591156 
End bp1592073 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content38% 
IMG OID637716633 
Productpolysaccharide deacetylase 
Protein accessionYP_321814 
Protein GI75907518 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0475838 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.758896 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAAAACA ATAAGTCTTT TCTTTGGCCA CAAGGAATAT TATTTGCATT GTTAGCTCTC 
AGTGCTAGTT TGAGTGTTGG TGTGATGATG TTGCTCAAAC CAAACGCATC AGATGCACAA
AGCAGAGTCA ACATAAACAA TATCAACATA ACTAGTACAC CCGCTAAAGC AGGAACTCAG
CAGCGAATTG AGAAATTCAA ATCGATGATG CTGACTAGTT GGCAGCAAGA AGCAAAAACT
AAGGGTTTGT CTTATGCTGT TCCGACTCGT TTTCAAGGTG CAACTATCAA AACAGCAAAA
CTCACCCACG GACAGAAAGT CATTGCACTT ACTTTTGATG ACGGCCCTTG GCCTGAAAGT
ACAACACAAG TATTAGATAT TCTTAAACAA AATAATATTA AAGCAACATT TTTTGTCGTT
GGACAAAACG TAAAAAATTA CCCAGATTTA TTAAGAAGAG TGGCTGCTGA AGGACACGCA
ATTGGTAACC ATACTTGGCA CCATTGGTAC CATTTCATGA ATCCACAAGT AGCAGCTTAT
GAAGTTAATA ATACAACCAA CCTTATATAT CAAACAACAG GTGTGAAAAC AGACTTATTT
CGTCCACCGG GAGGCATGAT GAATAATGGA CTAGTCTCCT ATGCTAAAAA TAATAAATAT
GCGGTGATCA TATGGTCATC CGACTCAATG GACTACTCAC GCCCCAGTGT ACCAAAGTTA
ATTAATAATG TGTTTAGGTT AGCAAAACCT GGAGGAATTG TACTTATGCA CGACGGCGGT
GGTAATCGGA CTCAAACTAT ACAAGCTCTA CCAGAGATTA TTGCTAGATT TCGCAAGCAA
GGTTACAGTT TTGTAACTGT TCCCGAACTT TTAGAAATGC AAGACAAAGA TGAAAAACTT
ATTGCCAATC AAAAGTAA
 
Protein sequence
MENNKSFLWP QGILFALLAL SASLSVGVMM LLKPNASDAQ SRVNINNINI TSTPAKAGTQ 
QRIEKFKSMM LTSWQQEAKT KGLSYAVPTR FQGATIKTAK LTHGQKVIAL TFDDGPWPES
TTQVLDILKQ NNIKATFFVV GQNVKNYPDL LRRVAAEGHA IGNHTWHHWY HFMNPQVAAY
EVNNTTNLIY QTTGVKTDLF RPPGGMMNNG LVSYAKNNKY AVIIWSSDSM DYSRPSVPKL
INNVFRLAKP GGIVLMHDGG GNRTQTIQAL PEIIARFRKQ GYSFVTVPEL LEMQDKDEKL
IANQK