| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1189 |
|---|
| Symbol | |
|---|
| ID | 3683327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 1463809 |
|---|
| End bp | 1465380 |
|---|
| Gene Length | 1572 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637716526 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_321708 |
|---|
| Protein GI | 75907412 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.981456 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAC TCAATAGCGA TCGCCGTAAC GGTAATAATA GTAATGGGAA GCAAAATAAG
ATTATCAAAA TTGATGATCA AGCTTCACCA CAGGCAAGCA AAGCTTTAGT TAAATTTAAT
CAAAACGACT TTGAGCAATC TGTTGTACTG CGCCAATCTC CTCTTTGGTC ACGCACAATT
ATGCTCACCC TGATAGGGTT AGCTTGTGTA GGTATTGGTT GGGCATATTT TGCCAAAATC
GAACAGGTAG TACCAGCTAC TGGTCAACTG AAACCAGAAG GTACAGTGAA AGAAGTACAA
GCACCAGTTA ATGGTGTAGT GAGAGAAGTT TTTGTTAAAA ATGGAGAGAC AGTTAATAAA
GGTGATCTAC TATTAACCTT TGATCAAGTT ACCACCGTCG CCCAGTTAAA TTCATTAGAA
AAAGTTAGAC GTGCCTTAAC TCAAGAAAAT CAGACATATC GCCGCTTGAT GAGATCAACA
GGTGGCATTG CTTCTGAACT AGAATTTGTT CGTAGTCGGT TACCACAAGA AGCAGCTTTT
CTGTTGAGAA ATCGTGCAGC GCTAGTTGCA GAAAATGAAT TGCTACGTAC TCAATTAAAT
AATGCTACCA CGGGTATAGG TTTAGATAGT GACGAACAAA AACAGCTAAA AGTTGCCAAA
ACTGAATTAG AGTCTCGTGC AGCCGCCGCA GGACTGGAAG TTTCCAAAAT TGAAAGACAA
CTAACTCAAA CAACGGTAAA ACTCCAAGAT ACTCAATCTA GCTTGGCAAT CCAACAACAG
ATTTTAGATA AGATTAAAAT CTTAGCAGAA GAAGGTGGTA TTTCTCAGCT ACAGTATCTC
AATCAACAAC AGCAGGTACA GACTACAGCA GCAGAAGTTG CCCAATTAGT TGAAGAACAG
AAACGCCTGC AATTTGATAT TGAAAAAAAC CAGCAGCAAG TTACTAATAC TGTCGCTACT
ACTGATAAAA ATATTTTAGA GAAAATTGCT GATAACAAAA AACGCATTGC AGAAATTGAT
AGTCAATTCA TGAGAATTGT CCTAGATAAT GAACGTAATT TAGCCGATAT CACAAGCAGA
ATTTCTCAAG CTCAACAGGA ACTTAAATAC CAAGAATTAC GCGCGCCTGT AGCTGGTACA
GTCTTTGATT TGAAAGCAAA TAATACTGGA TTTGTGGCAA ATCCTACACA AAAATTATTG
CAAATCGTCC CTAATGAAAA CTTTATTGCT GAGGTTTTCA TCACCAATAA AGATATTGGT
TTTGTCCGCA AAGGAATGAA AGTAGATGTC AGAATTGACT CTTTTCCTTT CAGCCAGTTT
GGTGATATCA AAGGTGCAAT AATTGATATT GGCTCAGATG CGTTGCCACC AGACGAAATA
TATAAGTTTT ATCGCTTCCC TGCCAGAATT AAACTAAATC AACAATACTT ACAAATTCAA
GATAAGCAGA TTTCCTTGCA GTCGGGTATG TCAATCAGCG CTAATATCAA AGTTAGGGAA
GAACGCACAG TCATGAGTCT GTTTACGGAA ATGTTTACCA ATCAAGTTGA TAGTTTAAAA
CAGGTGCGTT AA
|
|---|
| Protein sequence | MTQLNSDRRN GNNSNGKQNK IIKIDDQASP QASKALVKFN QNDFEQSVVL RQSPLWSRTI
MLTLIGLACV GIGWAYFAKI EQVVPATGQL KPEGTVKEVQ APVNGVVREV FVKNGETVNK
GDLLLTFDQV TTVAQLNSLE KVRRALTQEN QTYRRLMRST GGIASELEFV RSRLPQEAAF
LLRNRAALVA ENELLRTQLN NATTGIGLDS DEQKQLKVAK TELESRAAAA GLEVSKIERQ
LTQTTVKLQD TQSSLAIQQQ ILDKIKILAE EGGISQLQYL NQQQQVQTTA AEVAQLVEEQ
KRLQFDIEKN QQQVTNTVAT TDKNILEKIA DNKKRIAEID SQFMRIVLDN ERNLADITSR
ISQAQQELKY QELRAPVAGT VFDLKANNTG FVANPTQKLL QIVPNENFIA EVFITNKDIG
FVRKGMKVDV RIDSFPFSQF GDIKGAIIDI GSDALPPDEI YKFYRFPARI KLNQQYLQIQ
DKQISLQSGM SISANIKVRE ERTVMSLFTE MFTNQVDSLK QVR
|
|---|
| |