Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_1188 |
Symbol | |
ID | 3683326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 1460750 |
End bp | 1463761 |
Gene Length | 3012 bp |
Protein Length | 1003 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637716525 |
Product | cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters |
Protein accession | YP_321707 |
Protein GI | 75907411 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.229753 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTATA TTAAGAGCGC TTTTCAAGAA TTTCTTGTCA CCATTGAGGG TTTTGACCAG TTACCAAGTG AGGAACTGAC TCAAATCCTC GATAATCTAC AGCCATTTCG CTATCGCATT GGTCAAAAAA TTATTGGCAA AGAAAGAACA CCCGAACGAG TAACAATTAT TTATGAAGGT CAAGTGCGGC TGTTGGGATT TGATCCGCAA ACGCAAGTTC CGACAACCCT CAAGTTGATG AAACCAGGGG AAATCATTGG CGAAATTGGG TTATTGCGGG ATGTGGCTTG TGAAACTGCG ATCGCCTCTG CCGATGAAGT GATAGGCTTA ACCTTAAATG CCACAGACTA CCTACGTTTG TTGGAGTCAT ACCCAGGTTT TGCTCACGCA CGCCAAAACC AAAGTTACAT CATTGAGGTT TTCGATGTTC TGAGTTCCCA GTTAGCTAAC CAAGCTAACG TGATTAGTAA CCTTGATGAA CTGGCTGCAC AAGCTCTAGA AAATGCCAAA ATAGATTACC TTCCACCAGG GAGAAATTTC TTCCATCAAT TAGATAGTGA AAGCATTTGG TTTGTTAGTG GCGGAACAGT CACAAATTAC CCCATAGGTT CTCGCCTAGA ACCTAGTGAT GGAAATCGGG TAATTGAAGT CCAGGGAGAA AGTCCGGCGC GGTTAGTTGG TTTAGAGCCT TTAGATTTAT TGTTTTTAGA GAACGATTAT CACCAAGGTG GAGAACTTAC CGTCTATGAT AGTTCACCCA AAATTACAGA AGCTTTAGAT ATTCCCTATG CTAGCGAAGA AGAACTTTCG CAATCAAGTT CTGTTCCCAG CAATGCTAAA CCAAGACAAA AATTCCCCTT TGTTCGGGGT AAAGGTGAAC TAAATTCTAC CTTTGCCTGT TTTCAAATGC TCACCAAGCA CCTACAAATT CCCTTCCGCA AAGAAGTAGT GCGGCGCATT TTAAATGAGC AAATGAAGCG TCAAGGAACC ATCTCCTTCC CCGCTTGCGC TTACCTCTCC GAGTTAATTG GACTCAAAGC CAATCTAGTT GATTTACCGG CGGCGGCTAT TACCCGTGTT CCTACCCCGG CCTTAGTCCG TTATGGTGAT GGTTATGCGG TTTTGTATGC GGCGGATGCC AATAATGTAG TTTTAGGTGT ACCGTCCCAA GGGATAGTAC GCTGCAAACC CGCACAGATA CTTGAGCATT TAAATATTGT CGAAGACAGT TATCCCCCAC AAATTAGGGT ATTGCTGCTG TCTGCTACCA AAGAAACGCC ACAAGAACGC TTTGGTTTAC GTTGGTTCAT ACCTTACTTA TCCCGCTACC GCCGAGTTCT GATTGAAGTT TTTATCGCTT CTTTCTTTGT GCAGTTAGCG GCCTTAGCCA ATCCTTTGGT TATTCAGCTC ATCATTGATA AAGTCATCGT CCAAAACAGT ATTAGCACCC TGAATGTTTT GGGAGTTTTG CTGTTAGCCG TTGGGGTATT TGAAGCAGTT CTCACCACCT TAAGGACTTA CTTATTTGTC GATACTACCA ACCGTATCGA TATGGGTTTG GGTTCAGAAA TTATTGACCA CCTATTACGG CTACCACTGC GCTACTTTGA AAAGCGTCCA GTGGGTGAAC TGGCTACCCG CATCAACGAA TTAGAAAATA TTCGGCAGTT TCTCACTGGG ACAGCGTTGA CAGTAGGTTT AGATGCGGTC TTTTCCGTAG TTTATATCAT TGTCATGCTG TTTTATAGCT GGCAACTTAC CTTAGTTGGT TTAGGAACGA TTCCCATATT TATCGTTATC ACCTTAATTG CATCGCCTAC GGTGAGTAGA CAGTTACGTT CCAAAGCCGA ACGCAACTCA GAAACCCAAT CCTATTTAGT TGAGGTGATG TCTGGGATTC AAACAGTGAA GGCGCAAAAT ATCGAATTGC GATCGCGCTT TTCCTGGCAA GAACGGTATG CTCGATATGT AGCAGCAGGG TTTAAAAATG TCATCACATC AACCCTCGCT AACTCTACCA GTCAATTTCT CAACAAACTC AGCAGTTTAC TTGTGTTGTG GGTAGGTTCT TATTTGGTAC TCCAAGGTGA ATTAACTTTA GGGGAATTAA TCGCCTTTAG AATTATCTCT GGTTACGTCA CCAGTCCTAT CTTACGCTTA GCTCAACTCT GGCAAAGCTT CCAAGAAACA GCATTATCCC TAGAACGGTT GAGCGATATC GTTGATACGC CCCAAGAAGC CGAAATTGAC CGCTACAATA TTCCCTTACC GGAAATTCAA GGCTCTGTTA AATACGAGAA TATTTCCTTT AGGTTTGCAC CAAGCGGCCC TCTACAGCTA TCCAACGTCA ATTTAGAAAT CCCCTCTGGG AAATTTATCG GTATTGTCGG ACAAAGCGGC TCTGGTAAAA GTACGATGAT GAAATTACTG CTGCGCTTGT ACGACGTAGA GTCCGGCCGA ATTTTAATTG ATGGTTACGA TATTGCCAAA GTAGAACTAT ATTCATTACG TCGCCAAGTC GGTGTAGTAC CCCAAGAAAC CCTGTTATTT GACGGGACAG TGCAAGAAAA TATTGCTCTG ACAAATCCTG ATGCTAGCAC TGACGAAATT ATCGAAGCGG CGCGAGTAGC AGCAGCCCAT GAGTTTATTA TGAGCTTACC CAACGGGTAT AATACCCGCG TCGGCGAGCG TGGGGCTGGA CTTTCTGGGG GACAAAGACA GAGAATAGCG ATCGCCCGTT CTGTCCTCCA AAGACCTAAA CTATTAGTAT TAGACGAAGC TACCAGCGCT CTAGACTATC CTACAGAACG ACAAGTTTGC CTCAACTTAG CTAAAGCCTT TCAAGGTAGC ACAGTATTCT TCATCACCCA CCGCCTCAAC ACCGTCAGTC ATGCAGACAT GATTGTGGTC ATGGACGCAG GGAAAGTTAT AGAACAAGGA AGCCACCAAG AATTAATGGC GGCTAAAGGT CATTATTTTT ACCTGTACCA ACAACAGGAA GTAAATTTGT AA
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Protein sequence | MTYIKSAFQE FLVTIEGFDQ LPSEELTQIL DNLQPFRYRI GQKIIGKERT PERVTIIYEG QVRLLGFDPQ TQVPTTLKLM KPGEIIGEIG LLRDVACETA IASADEVIGL TLNATDYLRL LESYPGFAHA RQNQSYIIEV FDVLSSQLAN QANVISNLDE LAAQALENAK IDYLPPGRNF FHQLDSESIW FVSGGTVTNY PIGSRLEPSD GNRVIEVQGE SPARLVGLEP LDLLFLENDY HQGGELTVYD SSPKITEALD IPYASEEELS QSSSVPSNAK PRQKFPFVRG KGELNSTFAC FQMLTKHLQI PFRKEVVRRI LNEQMKRQGT ISFPACAYLS ELIGLKANLV DLPAAAITRV PTPALVRYGD GYAVLYAADA NNVVLGVPSQ GIVRCKPAQI LEHLNIVEDS YPPQIRVLLL SATKETPQER FGLRWFIPYL SRYRRVLIEV FIASFFVQLA ALANPLVIQL IIDKVIVQNS ISTLNVLGVL LLAVGVFEAV LTTLRTYLFV DTTNRIDMGL GSEIIDHLLR LPLRYFEKRP VGELATRINE LENIRQFLTG TALTVGLDAV FSVVYIIVML FYSWQLTLVG LGTIPIFIVI TLIASPTVSR QLRSKAERNS ETQSYLVEVM SGIQTVKAQN IELRSRFSWQ ERYARYVAAG FKNVITSTLA NSTSQFLNKL SSLLVLWVGS YLVLQGELTL GELIAFRIIS GYVTSPILRL AQLWQSFQET ALSLERLSDI VDTPQEAEID RYNIPLPEIQ GSVKYENISF RFAPSGPLQL SNVNLEIPSG KFIGIVGQSG SGKSTMMKLL LRLYDVESGR ILIDGYDIAK VELYSLRRQV GVVPQETLLF DGTVQENIAL TNPDASTDEI IEAARVAAAH EFIMSLPNGY NTRVGERGAG LSGGQRQRIA IARSVLQRPK LLVLDEATSA LDYPTERQVC LNLAKAFQGS TVFFITHRLN TVSHADMIVV MDAGKVIEQG SHQELMAAKG HYFYLYQQQE VNL
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