Gene Ava_1185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1185 
Symbol 
ID3683323 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1456600 
End bp1457310 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content44% 
IMG OID637716522 
Productpolysaccharide deacetylase 
Protein accessionYP_321704 
Protein GI75907408 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAAAAA TTCAGCTAGC TCCAATTTTC CCTATTGTTC ATCGGATTCT GCAACCAGCT 
TTTCCTGGCT GTCTTTGGAG TGGCGATCGC CATTGTCAAG CGATCGCTTT GACTTTTGAC
GACGGCCCCC ATCCCCAATA CACCCCCGAA GTCTTAGCAG TCTTAGATTA CTACAACATC
ACTGCTAGCT TTTTTTTGTT AGGTGCTTGC GTTAACCGTT CACCAAGTAT TGCTCAAGCA
ATATGCGATC GTGGTCATTG GATCGGCTTA CACGGTTACG ATCATCGCTC TTTCCCCATG
TTATCGCCCA TCGAACTTCA ACAGAGTTTA GCAAAAACCC AAGCAGCCAT CTACAATGCT
TGTAACCTCT CACCAGAAAA AGTGCGTGAC GTTAGACCTC CTAATGGGTT GTTCACACCC
AAAACATTAA ATCTCTTACA GGAATGGAAA TATCGTCCAG TGATGTGGAG TGTTGTCCCA
GAAGACTGGG TAAGACCTGG CGTTACACAA GTAGTACAGC GAGTTATTAA CCAAGTACAA
AACGGTTCAC TAATTGTTCT ACACGATGGT GCTTGTGGTG GACAAGATGT AGCTGCAACC
ATTCAAATCC TGATTCCGCA ACTATTACAA CAAGGCTACC AATTTATTAC AGTTGACGCT
CTATGGCAAC AATCAATTCC TTTGGAGAAT TCCCAATTAG ACTTGCTATA A
 
Protein sequence
MVKIQLAPIF PIVHRILQPA FPGCLWSGDR HCQAIALTFD DGPHPQYTPE VLAVLDYYNI 
TASFFLLGAC VNRSPSIAQA ICDRGHWIGL HGYDHRSFPM LSPIELQQSL AKTQAAIYNA
CNLSPEKVRD VRPPNGLFTP KTLNLLQEWK YRPVMWSVVP EDWVRPGVTQ VVQRVINQVQ
NGSLIVLHDG ACGGQDVAAT IQILIPQLLQ QGYQFITVDA LWQQSIPLEN SQLDLL