| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1185 |
|---|
| Symbol | |
|---|
| ID | 3683323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 1456600 |
|---|
| End bp | 1457310 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637716522 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_321704 |
|---|
| Protein GI | 75907408 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAAAA TTCAGCTAGC TCCAATTTTC CCTATTGTTC ATCGGATTCT GCAACCAGCT
TTTCCTGGCT GTCTTTGGAG TGGCGATCGC CATTGTCAAG CGATCGCTTT GACTTTTGAC
GACGGCCCCC ATCCCCAATA CACCCCCGAA GTCTTAGCAG TCTTAGATTA CTACAACATC
ACTGCTAGCT TTTTTTTGTT AGGTGCTTGC GTTAACCGTT CACCAAGTAT TGCTCAAGCA
ATATGCGATC GTGGTCATTG GATCGGCTTA CACGGTTACG ATCATCGCTC TTTCCCCATG
TTATCGCCCA TCGAACTTCA ACAGAGTTTA GCAAAAACCC AAGCAGCCAT CTACAATGCT
TGTAACCTCT CACCAGAAAA AGTGCGTGAC GTTAGACCTC CTAATGGGTT GTTCACACCC
AAAACATTAA ATCTCTTACA GGAATGGAAA TATCGTCCAG TGATGTGGAG TGTTGTCCCA
GAAGACTGGG TAAGACCTGG CGTTACACAA GTAGTACAGC GAGTTATTAA CCAAGTACAA
AACGGTTCAC TAATTGTTCT ACACGATGGT GCTTGTGGTG GACAAGATGT AGCTGCAACC
ATTCAAATCC TGATTCCGCA ACTATTACAA CAAGGCTACC AATTTATTAC AGTTGACGCT
CTATGGCAAC AATCAATTCC TTTGGAGAAT TCCCAATTAG ACTTGCTATA A
|
|---|
| Protein sequence | MVKIQLAPIF PIVHRILQPA FPGCLWSGDR HCQAIALTFD DGPHPQYTPE VLAVLDYYNI
TASFFLLGAC VNRSPSIAQA ICDRGHWIGL HGYDHRSFPM LSPIELQQSL AKTQAAIYNA
CNLSPEKVRD VRPPNGLFTP KTLNLLQEWK YRPVMWSVVP EDWVRPGVTQ VVQRVINQVQ
NGSLIVLHDG ACGGQDVAAT IQILIPQLLQ QGYQFITVDA LWQQSIPLEN SQLDLL
|
|---|
| |