Gene Ava_1025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1025 
Symbol 
ID3678693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1240536 
End bp1242539 
Gene Length2004 bp 
Protein Length667 aa 
Translation table11 
GC content48% 
IMG OID637716361 
Productnitrate transport ATP-binding subunits C and D 
Protein accessionYP_321544 
Protein GI75907248 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
[COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component 
TIGRFAM ID[TIGR01184] nitrate transport ATP-binding subunits C and D 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.129474 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGTAT TTGTTGCAGT TGACCAAATT GATAAGGTAT TTGAATTAAC CGGTGGTGGG 
AAATATATCG CCCTCAAAGG AATTGACCTC CAAATTAGAA AAGGTGAGTT TGTTTCTTTG
ATTGGTCACT CCGGTTGCGG TAAGTCCACT TTATTGAATA TGATTGCTGG TTTGGATTTG
CCAACTGAAG GTATAGTCAC CCTGGAAGGA CAAAGAATTA GCAGACCAGG GCCAGACCGG
ATGGTGGTTT TCCAAAACTA TTCTTTGTTG CCTTGGCGGA CGGTGAGAGA AAATATTGCC
CTAGCTGTCA ACTCAGTCAT GAAGGGAATG CCGGAAGCTG AACGCAAATC AATTGTAGAA
AAACATATAG ATATGGTGGG TTTGCGTCCC CACGCCGATA AACAACCGGG GATGTTGTCT
GGGGGACAAA AACAACGGGT AGCGATCGCC CGTGCCTTGG CAATTCGTCC TAAACTATTA
CTATTGGATG AACCCTTTGG CGCTTTGGAT GCTCTGACCA GAGGGAATTT GCAAGAACAG
TTAATGCAAA TCTGCGAAGA AAATGAAGTC ACGGCGGTAA TGGTGACTCA CGACGTAGAT
GAAGCCGTGC TGTTGTCTGA CAGAATTGTC ATGCTGACCA ACGGCCCCGA ATCCAAAATT
GGTGACATCC TAGAAGTTGA TATCCCCAGA CCCCGGAAAC GCATGGAAGT AGTAGAACAC
CCAAGCTACT ACAGTTTGCG GAGTGAGATG ATTTACTTCC TCAACCAACA AAAGCGGGTG
AAGAAAATTC GCGCCCGGAA AACCGCAGAT GTGGCTCGTC ACGGGTTAGA AAAAGTTAAC
CTAGAAATTG GTTTCTTACC TTTGACAGCT TGCGCCCCTC TAGCTGTAGC CAAAGAAAAA
GGTTTCTTTA CTAAGCATGG TTTGGATGAA GTCAACTTAG TGCGGGAAAC TAGCTGGCGG
GGTATTGTGG ATGGCATGAA AGGCGGTTAT ATAGATGCTG CCCAAATGCC TTCCGGGATG
CCCATGTGGT TAACCTTGGG TGGACATGAT AACCAACCCC TACCTGTGGT TACCGCCCTC
ACCATGACCC GTAACGGTAA CGCCATCACC TTGGCGAAAC GCTTTTATGA TGAAGGTGTT
CGCAGCTTAT CGGACTTCAA AAATTACCTC TTGCGTACCC GTGACCAACG TCACATCATG
GGGGTAGTCC ATCCCGCATC CATGCACAAT TTATTGCTAC GTTACTGGTT AGCGGCTGGT
GGAATTGACC CCGATTTAGA TGTGGATATG AGAACCATCC CGCCAGCGCA GATGGTAGCC
GACTTGCAAA ACAAAAGTAT TGACGGTTAT TGCGTGGGTG AACCTTGGAA TTACCGCGCC
GCCGTAGAAA ATATCGGCTT TACCATCGCT ACCGACTTGG AAGTGTGGTT GGGACACCCT
GGCAAAGTCC TTGGGGTGCG GGAAGATTGG GCAGAAAAAT ATCCTAATAC CCACATCGCC
TTGACTAAAG CTTTGCTGGA AGCCTGTGAA TATTGTTCTC GACCAGAAAA TGTCGAAGAA
GTCAGAAGAA TTGTGGCAGG TAGAGATTAC GTCAGCACAG ATTTAGATTA CATTCAACTG
GAAGACCCAA ATAGCCTTGT CTGTGATATA GACCACCCAT TACGAGACTA CGCCCACCAC
CAGTTTTTTG CCCAGTCAGC CATCAACCGT CCCAGCCGTA CCGAACAAAT CTGGATTATG
AGTCAGTTGG CGCGCTGGGG TGATACGCCT TTCCCCAGAA ACTGGGTAGA AGTTGTAGAA
CGGGTTTGTC GTGTACGCGT TTTCAGTACC GCCGCCAGAG AATTAGGTCT GGACATCAGC
TACACTCGCC AACCCATCGA ATTATTTGAT GGCACACCCT TTAACGCCGA CGACCCCATA
GCCTATCTCA ACAGCCTGCA CATTAAGCGT GATTTCTCCA TTGCGGAAGT CATCTTAGAC
TCGCCAACCA GAAGAGTAGC TTAA
 
Protein sequence
MSVFVAVDQI DKVFELTGGG KYIALKGIDL QIRKGEFVSL IGHSGCGKST LLNMIAGLDL 
PTEGIVTLEG QRISRPGPDR MVVFQNYSLL PWRTVRENIA LAVNSVMKGM PEAERKSIVE
KHIDMVGLRP HADKQPGMLS GGQKQRVAIA RALAIRPKLL LLDEPFGALD ALTRGNLQEQ
LMQICEENEV TAVMVTHDVD EAVLLSDRIV MLTNGPESKI GDILEVDIPR PRKRMEVVEH
PSYYSLRSEM IYFLNQQKRV KKIRARKTAD VARHGLEKVN LEIGFLPLTA CAPLAVAKEK
GFFTKHGLDE VNLVRETSWR GIVDGMKGGY IDAAQMPSGM PMWLTLGGHD NQPLPVVTAL
TMTRNGNAIT LAKRFYDEGV RSLSDFKNYL LRTRDQRHIM GVVHPASMHN LLLRYWLAAG
GIDPDLDVDM RTIPPAQMVA DLQNKSIDGY CVGEPWNYRA AVENIGFTIA TDLEVWLGHP
GKVLGVREDW AEKYPNTHIA LTKALLEACE YCSRPENVEE VRRIVAGRDY VSTDLDYIQL
EDPNSLVCDI DHPLRDYAHH QFFAQSAINR PSRTEQIWIM SQLARWGDTP FPRNWVEVVE
RVCRVRVFST AARELGLDIS YTRQPIELFD GTPFNADDPI AYLNSLHIKR DFSIAEVILD
SPTRRVA