Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_1009 |
Symbol | |
ID | 3679921 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 1218752 |
End bp | 1219561 |
Gene Length | 810 bp |
Protein Length | 269 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637716344 |
Product | TPR repeat-containing protein |
Protein accession | YP_321528 |
Protein GI | 75907232 |
COG category | [R] General function prediction only |
COG ID | [COG0457] FOG: TPR repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00000052453 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00393725 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAATTA AGTTAATTAG TGTTGTTCTC AGCTTATTAG TTTTGTTTGG CTGGGGTACA CCAGTCATGG CACAATCTCC GCAACCATCG ATTACCCAGG AACAAATAGC ACAAGGGGAG GAATGGAAAA ATCAGGCATT TAAGGCCACA AATAAAGGTG ATTTTGTCAC CGCAGAAAAG TATTGGACAA AAATTATTGA TAATTTCCCT ACTAATGCTG GGGCTTGGAG TAATCGCGGC AATTCGCGGG TGAGTCAGAA TAAGTTACAA GCAGCGCTGA CAGATTTCAA CAAAGCTATA GAATTAGCCC CGAATGTTAC CGACCCGTAT TTAAATCGGG GTACAGCATT AGAAGGCTTA GGGAAATGGT CTGAAGCGAT CGCTGATTAT AATCATGTCC TAGACCTCGA CCCTAACGAT GCAATGGCCT ATAACAATCG GGGTAATGCT AAAGCAGGTT TAGGGAAATG GTCGGAAGCG ATCGCAGATT ACAAAAAATC CTTTGAAATT GCCCCAAACT TTGCCTTCGC CCGTGCCAAC TACGCCATTG CCCTTTACGA AACTGGGCAA AAAGATGAGG CAATCCGGGA GATGCGTAAT ATTGTTCGTA AATACCCCAA CTTCGCAGAT GTCCGCGCCG CCCTAACAGC TATTTACTGG GTAAACGGAC AACAAGGTGA AGCCGAAAGC AACTGGGTAG CGGCTTATGG TTTAGATACC CGATATAAAG ATATGAACTG GGTAAAAAAC ATCCGTCGCT GGCCGCCTAG TATGGTGTCA GCCTTAGATA AGTTTTTGCA AATCAAGTAA
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Protein sequence | MIIKLISVVL SLLVLFGWGT PVMAQSPQPS ITQEQIAQGE EWKNQAFKAT NKGDFVTAEK YWTKIIDNFP TNAGAWSNRG NSRVSQNKLQ AALTDFNKAI ELAPNVTDPY LNRGTALEGL GKWSEAIADY NHVLDLDPND AMAYNNRGNA KAGLGKWSEA IADYKKSFEI APNFAFARAN YAIALYETGQ KDEAIREMRN IVRKYPNFAD VRAALTAIYW VNGQQGEAES NWVAAYGLDT RYKDMNWVKN IRRWPPSMVS ALDKFLQIK
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