| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_1007 |
|---|
| Symbol | |
|---|
| ID | 3679919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | - |
|---|
| Start bp | 1216559 |
|---|
| End bp | 1217332 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637716342 |
|---|
| Product | imidazole glycerol phosphate synthase subunit HisF |
|---|
| Protein accession | YP_321526 |
|---|
| Protein GI | 75907230 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0107] Imidazoleglycerol-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00735] imidazoleglycerol phosphate synthase, cyclase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.000465066 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000329405 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTATCTA AAAGAATCTT ACCTTGTTTA GATGTGAAGG CGGGACGGGT AGTTAAAGGA
GTTAACTTTG TTGATCTCAA GGATGCTGGT GATCCGGTAG AACTGGCCAA GGTTTACAAC
GATGCTGGGG CTGATGAGTT AGTGTTTCTG GATATTACGG CTACTCATGA AGACCGGGAT
ACGATCATTG ACGTTGTTTA CCGGACTGCC GAGCAGGTCT TTATTCCCCT GACTGTAGGT
GGTGGTATTC AATCCTTAGA AAATGTTAAA GCTTTGTTAC GCGCTGGGGC AGACAAGGTT
AGTATTAACT CTGCGGCAGT ACGTGACCCA GAATTGATTG ATCGGGCGAG CGATCGCTTT
GGTAATCAGT GCATCGTTGT AGCGATTGAT GCTAGACGCA GAGTAGATCC CAGTAATCCC
GGTTGGGATG TTTACGTGCG TGGTGGTAGA GAAAACACGG GTTTGGATGC CTTATCATGG
GCGAAAGAAG TGGAAAAGCG CGGTGCAGGT GAACTCTTGG TAACGAGTAT GGATGCTGAT
GGTACTCAAG CTGGTTACGA TCTAGAGTTA ACACGGGCAA TTGCTGAGTC TGTAGAAATA
CCAGTTATTG CTTCTGGTGG TGCGGGTAAC TGTGAACATA TATACACTGC TTTAACTGAA
GGGAAAGCGG AAGCTGCTTT ATTGGCATCG CTGCTACATT ACGGTCAACT CAGCGTGGCT
GAAATTAAGA ATTATTTGCG TGATTGCCAA GTTCCAGTCC GCTTATACGC ATAG
|
|---|
| Protein sequence | MLSKRILPCL DVKAGRVVKG VNFVDLKDAG DPVELAKVYN DAGADELVFL DITATHEDRD
TIIDVVYRTA EQVFIPLTVG GGIQSLENVK ALLRAGADKV SINSAAVRDP ELIDRASDRF
GNQCIVVAID ARRRVDPSNP GWDVYVRGGR ENTGLDALSW AKEVEKRGAG ELLVTSMDAD
GTQAGYDLEL TRAIAESVEI PVIASGGAGN CEHIYTALTE GKAEAALLAS LLHYGQLSVA
EIKNYLRDCQ VPVRLYA
|
|---|
| |